Commit 6d585305 authored by vasundra.toure's avatar vasundra.toure
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SPHN RDF schema 2021.2 version

parent f2f0437e
......@@ -8,12 +8,14 @@ The schema is derived from the [SPHN Dataset](https://sphn.ch/document/sphn-data
The schema is provided in Turtle (.ttl) and in OWL/XML (.owl) formats in the [ontology](https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology/-/blob/master/ontology) folder. This RDF schema does include links to other external ontologies such as SNOMED CT. These external terminologies in RDF are accessible upon request to the DCC [dcc@sib.swiss](mailto:dcc@sib.swiss).
The SPHN RDF schema is also available directly in WebProtégé at:
https://webprotege.dcc.sib.swiss/#projects/ad51bfb9-33f3-4eba-bfc7-b459955b51c7/edit/Classes.
* https://webprotege.dcc.sib.swiss/#projects/510fb1de-3dcc-4ff8-a56d-9004f5c078f9/edit/Classes (2021.2)
* https://webprotege.dcc.sib.swiss/#projects/ad51bfb9-33f3-4eba-bfc7-b459955b51c7/edit/Classes (2021.1)
> Note: the DCC instance of WebProtégé is accessible through a login. Please contact dcc@sibs.swiss for obtaining one.
> Note: the DCC instance of WebProtégé is accessible through a login. Please contact dcc@sib.swiss for obtaining one.
## Official releases
* [2021.2 release](https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology/-/tags/2021-2)
* [2021.1 release](https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology/-/tags/2021-1)
## Documentation
......@@ -29,13 +31,12 @@ The SPHN RDF schema is licensed under the [CC BY-NC-SA 4.0](https://creativecomm
This material contains content from:
* __LOINC__ (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc.
* __UCUM__ (https://ucum.org/trac) The copyright follows the instructions provided by Regenstrief Institute. UCUM is Copyright © 1999-2013 Regenstrief Institute, Inc. and The UCUM Organization, Indianapolis, IN. All rights reserved. See TermsOfUse.
* __CHOP__ (https://www.bfs.admin.ch/bfs/de/home/statistiken/kataloge-datenbanken/publikationen.assetdetail.13772937.html) © BFS - 2020, Bundesamt für Statistik, Medizinische Klassifikation, Switzerland
* __ATC__ (https://www.whocc.no/atc_ddd_index/) The copyright follows the instructions provided by WHO regarding ATC (https://www.whocc.no/copyright_disclaimer/): “Use of all or parts of the material requires reference to the WHO Collaborating Centre for Drug Statistics Methodology. Copying and distribution for commercial purposes is not allowed. Changing or manipulating the material is not allowed.”
* * __CHOP__ (https://www.bfs.admin.ch/bfs/de/home/statistiken/kataloge-datenbanken/publikationen.assetdetail.13772937.html) © BFS - 2020, Bundesamt für Statistik, Medizinische Klassifikation, Switzerland
* __ICD-10-GM__ (https://www.dimdi.de/dynamic/de/klassifikationen/icd/)The ICD-10-GM RDF file has been produced using the ICD-10-GM machine-readable version of the German Institute of Medical Documentation and Information (DIMDI) which belongs to the BfArM. The ICD-10-GM RDF file is available upon request to the SPHN Data Coordination Center (DCC) at dcc@sib.swiss.
* __LOINC__ (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc.
* __SNOMED CT__ (https://www.snomed.org/), SNOMED CT is copyright © SNOMED International 2021 v3.15.1., SNOMED CT international. In order to use the file please register with eHealth Suisse for an affiliate license for SNOMED CT (free) https://www.e-health-suisse.ch/technik-semantik/semantische-interoperabilitaet/snomed-ct/registration-und-lizenz.html
* __UCUM__ (https://ucum.org/trac) The copyright follows the instructions provided by Regenstrief Institute. UCUM is Copyright © 1999-2013 Regenstrief Institute, Inc. and The UCUM Organization, Indianapolis, IN. All rights reserved. See TermsOfUse.
## Contact
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......@@ -4,9 +4,39 @@ The SPHN RDF schema is available both as Turtle (.ttl) and OWL/XML(.owl) files.
## Change notes
New update from the 02.06.2021:
* fixing typo in __https://biomedit.ch/rdf/sphn-ontology/sphn/SustanceAmount__ changed to __https://biomedit.ch/rdf/sphn-ontology/sphn/SubstanceAmount__
* fixing meaning binding of __Body temperature (https://loinc.org/rdf/8310-5)__ from __Body temperature (observable entity) (http://snomed.info/id/386725007)__ to __Body Temperature https://biomedit.ch/rdf/sphn-ontology/BodyTemperature__
* added Range to hasMeasuredValue: __xsd:double__
* updated description of hasMeasuredValue
* added Range to hasDiagnosticExaminationUnit: __Unit__
\ No newline at end of file
03.09.2021 - New SPHN ontology 2021.2 release contains the following changes:
* Changed version IRI: __owl:versionIRI <https://biomedit.ch/rdf/sphn-ontology/sphn/2021/1>__ to __owl:versionIRI <https://biomedit.ch/rdf/sphn-ontology/sphn/2021/2>__
* Fixed typos:
* changed object property IRI __hasSimpleScorescoringSystemCode__ to __hasSimpleScoreScoringSystemCode__
* changed individual IRI __PAXgeneBloodBNA__ to __PAXgeneBloodDNA__
* Fixed range of hasDrugPrescriptionIndicationToStart: DrugPrescription_indicationToStart __or__ FOPHDiagnosis
* Fixed individual IRI: __PAXgeneBloodRNA+__ to __PAXgeneBloodRNAplus__
* Fixed IRIs of individuals that started with lower case letter (for consistency):
* __complementary__ to __Complementary__
* __death__ to __Death__
* __principal__ to __Principal__
* __secondary__ to __Secondary__
* __supplementary__ to __Supplementary__
* Deleted IRI __unknown__, added __unknown__ types to the individual __Unknown__, added a __skos:altLabel unknown__ to individual __Unknown__.
* Fixed IRIs of individuals that contained dots ('.'):
* __PPTube0.5to2mL__ to __PPTube0dot5to2mL__
* __RECIST1.0__ to __RECIST1dot0__
* __RECIST1.1__ to __RECIST1dot1__
* The references of the modified individuals in the ValueSet classes have also been updated accordingly
* Changed data property IRI __hasExtractionDate__ to __hasExtractionDateTime__
* Added HealthcareEncounter to the domain of hasAdministrativeCase
* Added an rdfs:comment to Class __Measurement__
* Fixed prefixes:
* Prefix __atc__ now refers to namespace __https://www.whocc.no/atc_ddd_index/?code=__
* Prefix __loinc__ now refers to namespace __https://loinc.org/rdf/__
* Prefix __sphn-atc__ refers to namespace __https://biomedit.ch/rdf/sphn-resource/atc/__
* Prefix __sphn-loinc__ refers to namespace __https://biomedit.ch/rdf/sphn-resource/loinc/__
02.06.2021 - new updates on the SPHN ontology 2021.1 release:
* Fixed typo in __https://biomedit.ch/rdf/sphn-ontology/sphn/SustanceAmount__ changed to __https://biomedit.ch/rdf/sphn-ontology/sphn/SubstanceAmount__
* Fixed meaning binding of __Body temperature (https://loinc.org/rdf/8310-5)__ from __Body temperature (observable entity) (http://snomed.info/id/386725007)__ to __Body Temperature https://biomedit.ch/rdf/sphn-ontology/BodyTemperature__
* Added Range to hasMeasuredValue: __xsd:double__
* Updated description of hasMeasuredValue
* Added Range to hasDiagnosticExaminationUnit: __Unit__
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<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
<uri id="User Entered Import Resolution" name="https://biomedit.ch/rdf/sphn-resource/ucum/2021/1" uri="external_terminologies_2021-2/ttl/sphn_ucum_2021-1.ttl"/>
<uri id="User Entered Import Resolution" name="https://biomedit.ch/rdf/sphn-resource/loinc/2.69/1" uri="external_terminologies_2021-2/ttl/sphn_loinc_2.69-1.ttl"/>
<uri id="User Entered Import Resolution" name="https://biomedit.ch/rdf/sphn-resource/icd-10-gm/2021/1" uri="external_terminologies_2021-2/ttl/sphn_icd-10-gm_2021-1.ttl"/>
<uri id="User Entered Import Resolution" name="https://biomedit.ch/rdf/sphn-resource/chop/2021/1" uri="external_terminologies_2021-2/ttl/sphn_chop_2021-1.ttl"/>
<uri id="User Entered Import Resolution" name="https://biomedit.ch/rdf/sphn-resource/atc/2021/3" uri="external_terminologies_2021-2/ttl/sphn_atc_2021-3.ttl"/>
<uri id="User Entered Import Resolution" name="http://snomed.info/sct/900000000000207008/version/20210304" uri="external_terminologies_2021-2/ttl/snomedct-2021-03-04.ttl"/>
<uri id="User Entered Import Resolution" name="https://biomedit.ch/rdf/sphn-ontology/sphn/2021/2" uri="sphn_ontology.ttl"/>
</catalog>
......@@ -11,7 +11,7 @@
<https://biomedit.ch/rdf/sphn-ontology/PROJECT-NAME> rdf:type owl:Ontology ;
owl:versionIRI <https://biomedit.ch/rdf/sphn-ontology/PROJECT-NAME/YEAR/VERSION> ;
owl:imports <https://biomedit.ch/rdf/sphn-ontology/sphn/2021/1> ;
owl:imports <https://biomedit.ch/rdf/sphn-ontology/sphn/2021/2> ;
dc:description "The RDF schema describing concepts defined in the <PROJECT-NAME> dataset" ;
dc:title "The <PROJECT-NAME> ontology" ;
dcterms:license <https://creativecommons.org/licenses/by-nc-sa/4.0/> .
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