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# SPHN ontology
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The SPHN ontology project contains the SPHN RDF schema and other related content such as the SPHN Dataset and SPARQL queries.
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## SPHN RDF schema

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The schema is derived from the [SPHN Dataset](https://sphn.ch/document/sphn-dataset/) accessible on the [excel](https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology/-/blob/master/excel) folder.
The schema is provided in Turtle (.ttl) and in OWL/XML (.owl) formats in the [ontology](https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology/-/blob/master/ontology) folder. This RDF schema does include links to other external ontologies such as SNOMED CT. These external terminologies in RDF are accessible upon request to the DCC [dcc@sib.swiss](mailto:dcc@sib.swiss).
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The SPHN RDF schema is also available directly in WebProtégé at: 
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* https://webprotege.dcc.sib.swiss/#projects/510fb1de-3dcc-4ff8-a56d-9004f5c078f9/edit/Classes (2021.2)
* https://webprotege.dcc.sib.swiss/#projects/ad51bfb9-33f3-4eba-bfc7-b459955b51c7/edit/Classes (2021.1)
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> Note: the DCC instance of WebProtégé is accessible through a login. Please contact dcc@sib.swiss for obtaining one.
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## Official releases
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* [2021.2 release](https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology/-/tags/2021-2)
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* [2021.1 release](https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology/-/tags/2021-1)
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## Documentation

General documentation can be found at: [sphn-semantic-framework.readthedocs.io](https://sphn-semantic-framework.readthedocs.io/en/latest/index.html)


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## License and Copyright

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© Copyright 2021, Personalized Health Informatics Group (PHI), SIB Swiss Institute of Bioinformatics
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The SPHN RDF schema is licensed under the [CC BY-NC-SA 4.0](https://creativecommons.org/licenses/by-nc-sa/4.0/) (see [License](https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology/-/blob/master/LICENSE)).

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This material contains content from:
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* __ATC__  (https://www.whocc.no/atc_ddd_index/) The copyright follows the instructions provided by WHO regarding ATC (https://www.whocc.no/copyright_disclaimer/): “Use of all or parts of the material requires reference to the WHO Collaborating Centre for Drug Statistics Methodology. Copying and distribution for commercial purposes is not allowed. Changing or manipulating the material is not allowed.”
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* __CHOP__ (https://www.bfs.admin.ch/bfs/de/home/statistiken/kataloge-datenbanken/publikationen.assetdetail.13772937.html) © BFS - 2020, Bundesamt für Statistik, Medizinische Klassifikation, Switzerland
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* __ICD-10-GM__ (https://www.dimdi.de/dynamic/de/klassifikationen/icd/)The ICD-10-GM RDF file has been produced using the ICD-10-GM machine-readable version of the German Institute of Medical Documentation and Information (DIMDI) which belongs to the BfArM and is available on the Website www.dimdi.de. Download conditions and terms of use published by the BfArM apply ([available on BfArM website](https://www.bfarm.de/EN/Code-systems/Classifications/ICD/ICD-10-GM/_node.html)).
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* __LOINC__ (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc.
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* __SNOMED CT__ (https://www.snomed.org/), SNOMED CT is copyright © SNOMED International 2021 v3.15.1., SNOMED CT international. In order to use the file please register with eHealth Suisse for an affiliate license for SNOMED CT (free) https://www.e-health-suisse.ch/technik-semantik/semantische-interoperabilitaet/snomed-ct/registration-und-lizenz.html. Note: for compliance purposes, whoever distributes the SNOMED CT RDF received through the Terminology Service must keep a record of users using it.
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* __UCUM__ (https://ucum.org/trac) The copyright follows the instructions provided by Regenstrief Institute. UCUM is Copyright © 1999-2013 Regenstrief Institute, Inc. and The UCUM Organization, Indianapolis, IN. All rights reserved. See [Copyright Notice and License] (https://ucum.org/trac/wiki/license), in particular the Disclaimer of Warranty (Section 7).
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## Contact

For any question or comment, please contact the data coordination center at [dcc@sib.swiss](mailto:dcc@sib.swiss).