diff --git a/schemas/pre-release-testing/DDL_tables.sql b/schemas/pre-release-testing/DDL_tables.sql
index d05ebfe485872e63df761485c8de0adebeecc715..1d508d847625359dd0795bf35f9495cd3c1693a1 100644
--- a/schemas/pre-release-testing/DDL_tables.sql
+++ b/schemas/pre-release-testing/DDL_tables.sql
@@ -351,40 +351,20 @@ CREATE TABLE "project-name"."sphn_AssessmentEvent" (
"sphn_hasAssessment__sphn_hasComponent__sphn_hasRange__sphn_hasUpperLimit__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
"sphn_hasAssessment__sphn_hasComponent__sphn_hasRange__sphn_hasUpperLimit__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
"sphn_hasAssessment__sphn_hasComponent__sphn_hasRange__sphn_hasUpperLimit__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__sphn_hasCodingSystemAndVersion" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__sphn_hasIdentifier" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__sphn_hasName" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasStringValue" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasStringValue" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasStringValue" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__iri" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__sphn_hasCodingSystemAndVersion" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__sphn_hasIdentifier" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__sphn_hasName" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__termid" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasValue" numeric,
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasStringValue" varchar(3000),
"sphn_hasAssessment__sphn_hasName" varchar(3000),
"sphn_hasAssessment__sphn_hasRange__id" varchar(3000),
"sphn_hasAssessment__sphn_hasRange__sphn_hasLowerLimit__id" varchar(3000),
@@ -399,40 +379,20 @@ CREATE TABLE "project-name"."sphn_AssessmentEvent" (
"sphn_hasAssessment__sphn_hasRange__sphn_hasUpperLimit__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
"sphn_hasAssessment__sphn_hasRange__sphn_hasUpperLimit__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
"sphn_hasAssessment__sphn_hasRange__sphn_hasUpperLimit__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasResult__AssessmentResult__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasCode__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasCode__sphn_hasCodingSystemAndVersion" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasCode__sphn_hasIdentifier" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasCode__sphn_hasName" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasQuantity__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
- "sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasStringValue" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorGradeAssessmentResult__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
- "sphn_hasAssessment__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasStringValue" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorStageAssessmentResult__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorStageAssessmentResult__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorStageAssessmentResult__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
- "sphn_hasAssessment__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasResult__TumorStageAssessmentResult__sphn_hasStringValue" varchar(3000),
+ "sphn_hasAssessment__sphn_hasResult__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasResult__sphn_hasCode__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasResult__sphn_hasCode__iri" varchar(3000),
+ "sphn_hasAssessment__sphn_hasResult__sphn_hasCode__sphn_hasCodingSystemAndVersion" varchar(3000),
+ "sphn_hasAssessment__sphn_hasResult__sphn_hasCode__sphn_hasIdentifier" varchar(3000),
+ "sphn_hasAssessment__sphn_hasResult__sphn_hasCode__sphn_hasName" varchar(3000),
+ "sphn_hasAssessment__sphn_hasResult__sphn_hasCode__termid" varchar(3000),
+ "sphn_hasAssessment__sphn_hasResult__sphn_hasQuantity__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
+ "sphn_hasAssessment__sphn_hasResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
+ "sphn_hasAssessment__sphn_hasResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
+ "sphn_hasAssessment__sphn_hasResult__sphn_hasQuantity__sphn_hasValue" numeric,
+ "sphn_hasAssessment__sphn_hasResult__sphn_hasStringValue" varchar(3000),
"sphn_hasDataProvider__id" varchar(3000) NOT NULL,
"sphn_hasDateTime" TIMESTAMPTZ NOT NULL,
"sphn_hasPerformer__id" varchar(3000),
@@ -2290,6 +2250,13 @@ CREATE TABLE "project-name"."sphn_MicroorganismIdentificationLabTestEvent" (
"sphn_hasLabTest__sphn_hasResult__sphn_hasNumericalReference__ReferenceValue__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
"sphn_hasLabTest__sphn_hasResult__sphn_hasNumericalReference__ReferenceValue__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
"sphn_hasLabTest__sphn_hasResult__sphn_hasNumericalReference__ReferenceValue__sphn_hasQuantity__sphn_hasValue" numeric,
+ "sphn_hasLabTest__sphn_hasResult__sphn_hasOrganism__id" varchar(3000),
+ "sphn_hasLabTest__sphn_hasResult__sphn_hasOrganism__sphn_hasCode__id" varchar(3000),
+ "sphn_hasLabTest__sphn_hasResult__sphn_hasOrganism__sphn_hasCode__iri" varchar(3000),
+ "sphn_hasLabTest__sphn_hasResult__sphn_hasOrganism__sphn_hasCode__sphn_hasCodingSystemAndVersion" varchar(3000),
+ "sphn_hasLabTest__sphn_hasResult__sphn_hasOrganism__sphn_hasCode__sphn_hasIdentifier" varchar(3000),
+ "sphn_hasLabTest__sphn_hasResult__sphn_hasOrganism__sphn_hasCode__sphn_hasName" varchar(3000),
+ "sphn_hasLabTest__sphn_hasResult__sphn_hasOrganism__sphn_hasCode__termid" varchar(3000),
"sphn_hasLabTest__sphn_hasResult__sphn_hasPresenceCode__iri" varchar(3000),
"sphn_hasLabTest__sphn_hasResult__sphn_hasPresenceCode__termid" varchar(3000),
"sphn_hasLabTest__sphn_hasResult__sphn_hasQuantity__id" varchar(3000),
@@ -2460,7 +2427,7 @@ CREATE TABLE "project-name"."sphn_OxygenAdministrationEvent" (
"sphn_hasFlowRate__id" varchar(3000),
"sphn_hasFlowRate__sphn_hasComparator__iri" "project-name"."sphn_OxygenAdministrationEvent__sphn_hasFlowRate__sphn_hasComparator__iri_type",
"sphn_hasFlowRate__sphn_hasUnit__id" varchar(3000),
- "sphn_hasFlowRate__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
+ "sphn_hasFlowRate__sphn_hasUnit__sphn_hasCode__iri" "project-name"."sphn_OxygenAdministrationEvent__sphn_hasFlowRate__sphn_hasUnit__sphn_hasCode__iri_type",
"sphn_hasFlowRate__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
"sphn_hasFlowRate__sphn_hasValue" numeric,
"sphn_hasFractionOfInspiredOxygen__id" varchar(3000),
@@ -2584,7 +2551,7 @@ CREATE TABLE "project-name"."sphn_RadiotherapyProcedure" (
"sphn_hasFractionsNumber__id" varchar(3000),
"sphn_hasFractionsNumber__sphn_hasComparator__iri" "project-name"."sphn_RadiotherapyProcedure__sphn_hasFractionsNumber__sphn_hasComparator__iri_type",
"sphn_hasFractionsNumber__sphn_hasUnit__id" varchar(3000),
- "sphn_hasFractionsNumber__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
+ "sphn_hasFractionsNumber__sphn_hasUnit__sphn_hasCode__iri" "project-name"."sphn_RadiotherapyProcedure__sphn_hasFractionsNumber__sphn_hasUnit__sphn_hasCode__iri_type",
"sphn_hasFractionsNumber__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
"sphn_hasFractionsNumber__sphn_hasValue" numeric,
"sphn_hasIntent__id" varchar(3000),
@@ -3028,40 +2995,20 @@ CREATE TABLE "project-name"."sphn_TumorGradeAssessmentEvent" (
"sphn_hasAssessment__sphn_hasComponent__sphn_hasRange__sphn_hasUpperLimit__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
"sphn_hasAssessment__sphn_hasComponent__sphn_hasRange__sphn_hasUpperLimit__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
"sphn_hasAssessment__sphn_hasComponent__sphn_hasRange__sphn_hasUpperLimit__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__sphn_hasCodingSystemAndVersion" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__sphn_hasIdentifier" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__sphn_hasName" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_TumorGradeAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasStringValue" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_TumorGradeAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasStringValue" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_TumorGradeAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasStringValue" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__iri" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__sphn_hasCodingSystemAndVersion" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__sphn_hasIdentifier" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__sphn_hasName" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__termid" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_TumorGradeAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasValue" numeric,
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasStringValue" varchar(3000),
"sphn_hasAssessment__sphn_hasName" varchar(3000),
"sphn_hasAssessment__sphn_hasRange__id" varchar(3000),
"sphn_hasAssessment__sphn_hasRange__sphn_hasLowerLimit__id" varchar(3000),
@@ -3207,40 +3154,20 @@ CREATE TABLE "project-name"."sphn_TumorStageAssessmentEvent" (
"sphn_hasAssessment__sphn_hasComponent__sphn_hasRange__sphn_hasUpperLimit__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
"sphn_hasAssessment__sphn_hasComponent__sphn_hasRange__sphn_hasUpperLimit__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
"sphn_hasAssessment__sphn_hasComponent__sphn_hasRange__sphn_hasUpperLimit__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__sphn_hasCodingSystemAndVersion" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__sphn_hasIdentifier" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__sphn_hasName" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_TumorStageAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasStringValue" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_TumorStageAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasStringValue" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_TumorStageAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasValue" numeric,
- "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasStringValue" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__iri" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__sphn_hasCodingSystemAndVersion" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__sphn_hasIdentifier" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__sphn_hasName" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasCode__termid" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasComparator__iri" "project-name"."sphn_TumorStageAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasComparator__iri_type",
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasUnit__id" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__iri" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasUnit__sphn_hasCode__termid" varchar(3000),
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasValue" numeric,
+ "sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasStringValue" varchar(3000),
"sphn_hasAssessment__sphn_hasName" varchar(3000),
"sphn_hasAssessment__sphn_hasRange__id" varchar(3000),
"sphn_hasAssessment__sphn_hasRange__sphn_hasLowerLimit__id" varchar(3000),
diff --git a/schemas/pre-release-testing/DDL_types.sql b/schemas/pre-release-testing/DDL_types.sql
index cb3557e1896721fba658c5ca11043f61c695c39b..79bcec18a8a234fa7e48621c7aee6fb5dd9ea458 100644
--- a/schemas/pre-release-testing/DDL_types.sql
+++ b/schemas/pre-release-testing/DDL_types.sql
@@ -94,19 +94,7 @@ CREATE TYPE "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasCo
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual'
);
-CREATE TYPE "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual'
-);
-CREATE TYPE "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual'
-);
-CREATE TYPE "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
+CREATE TYPE "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
@@ -124,19 +112,7 @@ CREATE TYPE "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasRa
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual'
);
-CREATE TYPE "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual'
-);
-CREATE TYPE "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual'
-);
-CREATE TYPE "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
+CREATE TYPE "project-name"."sphn_AssessmentEvent__sphn_hasAssessment__sphn_hasResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
@@ -764,6 +740,9 @@ CREATE TYPE "project-name"."sphn_OxygenAdministrationEvent__sphn_hasFlowRate__sp
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual'
);
+CREATE TYPE "project-name"."sphn_OxygenAdministrationEvent__sphn_hasFlowRate__sphn_hasUnit__sphn_hasCode__iri_type" AS ENUM (
+ 'https://biomedit.ch/rdf/sphn-resource/ucum/Lpermin'
+);
CREATE TYPE "project-name"."sphn_OxygenAdministrationEvent__sphn_hasFractionOfInspiredOxygen__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual',
@@ -788,6 +767,9 @@ CREATE TYPE "project-name"."sphn_RadiotherapyProcedure__sphn_hasFractionsNumber_
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual'
);
+CREATE TYPE "project-name"."sphn_RadiotherapyProcedure__sphn_hasFractionsNumber__sphn_hasUnit__sphn_hasCode__iri_type" AS ENUM (
+ 'https://biomedit.ch/rdf/sphn-resource/ucum/cblnbcbr'
+);
CREATE TYPE "project-name"."sphn_RadiotherapyProcedure__sphn_hasRadiationQuantity__sphn_hasComparator__iri_type" AS ENUM (
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual',
@@ -995,19 +977,7 @@ CREATE TYPE "project-name"."sphn_TumorGradeAssessmentEvent__sphn_hasAssessment__
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual'
);
-CREATE TYPE "project-name"."sphn_TumorGradeAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual'
-);
-CREATE TYPE "project-name"."sphn_TumorGradeAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual'
-);
-CREATE TYPE "project-name"."sphn_TumorGradeAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
+CREATE TYPE "project-name"."sphn_TumorGradeAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
@@ -1104,19 +1074,7 @@ CREATE TYPE "project-name"."sphn_TumorStageAssessmentEvent__sphn_hasAssessment__
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual'
);
-CREATE TYPE "project-name"."sphn_TumorStageAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__AssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual'
-);
-CREATE TYPE "project-name"."sphn_TumorStageAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorGradeAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
- 'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual'
-);
-CREATE TYPE "project-name"."sphn_TumorStageAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__TumorStageAssessmentResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
+CREATE TYPE "project-name"."sphn_TumorStageAssessmentEvent__sphn_hasAssessment__sphn_hasComponent__sphn_hasResult__sphn_hasQuantity__sphn_hasComparator__iri_type" AS ENUM (
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual',
'https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan',
diff --git a/schemas/pre-release-testing/json_schema.json b/schemas/pre-release-testing/json_schema.json
index d35a605afd0b202614cee387a00fbbfb6c5235c1..6a2cab1a6961aa63363820e11e790a58205b6409 100644
--- a/schemas/pre-release-testing/json_schema.json
+++ b/schemas/pre-release-testing/json_schema.json
@@ -3998,182 +3998,49 @@
"sphn:hasResult": {
"description": "List of 'hasResult' properties",
"items": {
- "description": "SPHN Concept 'AssessmentResult'/SPHN Concept 'TumorGradeAssessmentResult'/SPHN Concept 'TumorStageAssessmentResult'",
- "oneOf": [
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'AssessmentResult'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'AssessmentResult'",
- "type": "string"
- },
- "sphn:hasCode": {
- "description": "SPHN Concept 'Code'/SPHN Concept 'Terminology'",
- "oneOf": [
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'Code'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Code'",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "sphn:hasCodingSystemAndVersion": {
- "description": "Value for 'hasCodingSystemAndVersion' property",
- "type": "string"
- },
- "sphn:hasIdentifier": {
- "description": "Value for 'hasIdentifier' property",
- "type": "string"
- },
- "sphn:hasName": {
- "description": "Value for 'hasName' property",
- "type": "string"
- }
- },
- "required": [
- "id",
- "sphn:hasCodingSystemAndVersion",
- "sphn:hasIdentifier"
- ],
- "type": "object"
- },
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'Terminology'",
- "properties": {
- "iri": {
- "description": "IRI of SPHN Concept 'Terminology'",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- }
- ],
- "type": "object"
- },
- "sphn:hasQuantity": {
+ "additionalProperties": false,
+ "description": "SPHN Concept 'AssessmentResult'",
+ "properties": {
+ "id": {
+ "description": "ID of SPHN Concept 'AssessmentResult'",
+ "type": "string"
+ },
+ "sphn:hasCode": {
+ "description": "SPHN Concept 'Code'/SPHN Concept 'Terminology'",
+ "oneOf": [
+ {
"additionalProperties": false,
- "description": "SPHN Concept 'Quantity'",
+ "description": "SPHN Concept 'Code'",
"properties": {
"id": {
- "description": "ID of SPHN Concept 'Quantity'",
+ "description": "ID of SPHN Concept 'Code'",
"type": "string"
},
- "sphn:hasComparator": {
- "additionalProperties": false,
- "description": "Value Set for property 'hasComparator'",
- "properties": {
- "iri": {
- "description": "IRI for 'hasComparator' property",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
- ],
- "type": "string"
- }
- },
- "required": [
- "iri"
- ],
- "type": "object"
+ "sourceConceptID": {
+ "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
+ "type": "string"
},
- "sphn:hasUnit": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Unit'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Unit'",
- "type": "string"
- },
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "Schema for property 'hasCode'",
- "properties": {
- "iri": {
- "description": "UCUM IRI for 'hasCode' property",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- }
- },
- "required": [
- "id",
- "sphn:hasCode"
- ],
- "type": "object"
+ "sphn:hasCodingSystemAndVersion": {
+ "description": "Value for 'hasCodingSystemAndVersion' property",
+ "type": "string"
},
- "sphn:hasValue": {
- "description": "Value for 'hasValue' property",
- "type": "number"
+ "sphn:hasIdentifier": {
+ "description": "Value for 'hasIdentifier' property",
+ "type": "string"
+ },
+ "sphn:hasName": {
+ "description": "Value for 'hasName' property",
+ "type": "string"
}
},
"required": [
"id",
- "sphn:hasUnit",
- "sphn:hasValue"
+ "sphn:hasCodingSystemAndVersion",
+ "sphn:hasIdentifier"
],
"type": "object"
},
- "sphn:hasStringValue": {
- "description": "Value for 'hasStringValue' property",
- "type": "string"
- },
- "target_concept": {
- "description": "IRI for Concept 'AssessmentResult'",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult"
- ],
- "type": "string"
- }
- },
- "required": [
- "id",
- "target_concept"
- ],
- "type": "object"
- },
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'TumorGradeAssessmentResult'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'TumorGradeAssessmentResult'",
- "type": "string"
- },
- "sphn:hasCode": {
+ {
"additionalProperties": false,
"description": "SPHN Concept 'Terminology'",
"properties": {
@@ -4195,230 +4062,95 @@
"termid"
],
"type": "object"
+ }
+ ],
+ "type": "object"
+ },
+ "sphn:hasQuantity": {
+ "additionalProperties": false,
+ "description": "SPHN Concept 'Quantity'",
+ "properties": {
+ "id": {
+ "description": "ID of SPHN Concept 'Quantity'",
+ "type": "string"
},
- "sphn:hasQuantity": {
+ "sphn:hasComparator": {
"additionalProperties": false,
- "description": "SPHN Concept 'Quantity'",
+ "description": "Value Set for property 'hasComparator'",
+ "properties": {
+ "iri": {
+ "description": "IRI for 'hasComparator' property",
+ "enum": [
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
+ ],
+ "type": "string"
+ }
+ },
+ "required": [
+ "iri"
+ ],
+ "type": "object"
+ },
+ "sphn:hasUnit": {
+ "additionalProperties": false,
+ "description": "SPHN Concept 'Unit'",
"properties": {
"id": {
- "description": "ID of SPHN Concept 'Quantity'",
+ "description": "ID of SPHN Concept 'Unit'",
"type": "string"
},
- "sphn:hasComparator": {
+ "sphn:hasCode": {
"additionalProperties": false,
- "description": "Value Set for property 'hasComparator'",
+ "description": "Schema for property 'hasCode'",
"properties": {
"iri": {
- "description": "IRI for 'hasComparator' property",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
- ],
+ "description": "UCUM IRI for 'hasCode' property",
"type": "string"
- }
- },
- "required": [
- "iri"
- ],
- "type": "object"
- },
- "sphn:hasUnit": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Unit'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Unit'",
+ },
+ "sourceConceptID": {
+ "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
"type": "string"
},
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "Schema for property 'hasCode'",
- "properties": {
- "iri": {
- "description": "UCUM IRI for 'hasCode' property",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
+ "termid": {
+ "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
+ "type": "string"
}
},
"required": [
- "id",
- "sphn:hasCode"
- ],
- "type": "object"
- },
- "sphn:hasValue": {
- "description": "Value for 'hasValue' property",
- "type": "number"
- }
- },
- "required": [
- "id",
- "sphn:hasUnit",
- "sphn:hasValue"
- ],
- "type": "object"
- },
- "sphn:hasStringValue": {
- "description": "Value for 'hasStringValue' property",
- "type": "string"
- },
- "target_concept": {
- "description": "IRI for Concept 'TumorGradeAssessmentResult'",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult"
- ],
- "type": "string"
- }
- },
- "required": [
- "id",
- "target_concept"
- ],
- "type": "object"
- },
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'TumorStageAssessmentResult'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'TumorStageAssessmentResult'",
- "type": "string"
- },
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Terminology'",
- "properties": {
- "iri": {
- "description": "IRI of SPHN Concept 'Terminology'",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- },
- "sphn:hasQuantity": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Quantity'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Quantity'",
- "type": "string"
- },
- "sphn:hasComparator": {
- "additionalProperties": false,
- "description": "Value Set for property 'hasComparator'",
- "properties": {
- "iri": {
- "description": "IRI for 'hasComparator' property",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
- ],
- "type": "string"
- }
- },
- "required": [
- "iri"
- ],
- "type": "object"
- },
- "sphn:hasUnit": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Unit'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Unit'",
- "type": "string"
- },
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "Schema for property 'hasCode'",
- "properties": {
- "iri": {
- "description": "UCUM IRI for 'hasCode' property",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- }
- },
- "required": [
- "id",
- "sphn:hasCode"
+ "iri",
+ "termid"
],
"type": "object"
- },
- "sphn:hasValue": {
- "description": "Value for 'hasValue' property",
- "type": "number"
}
},
"required": [
"id",
- "sphn:hasUnit",
- "sphn:hasValue"
+ "sphn:hasCode"
],
"type": "object"
},
- "sphn:hasStringValue": {
- "description": "Value for 'hasStringValue' property",
- "type": "string"
- },
- "target_concept": {
- "description": "IRI for Concept 'TumorStageAssessmentResult'",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult"
- ],
- "type": "string"
+ "sphn:hasValue": {
+ "description": "Value for 'hasValue' property",
+ "type": "number"
}
},
"required": [
"id",
- "target_concept"
+ "sphn:hasUnit",
+ "sphn:hasValue"
],
"type": "object"
+ },
+ "sphn:hasStringValue": {
+ "description": "Value for 'hasStringValue' property",
+ "type": "string"
}
+ },
+ "required": [
+ "id"
],
"type": "object"
},
@@ -4607,57 +4339,116 @@
"type": "object"
},
"sphn:hasResult": {
- "description": "SPHN Concept 'AssessmentResult'/SPHN Concept 'TumorGradeAssessmentResult'/SPHN Concept 'TumorStageAssessmentResult'",
- "oneOf": [
- {
+ "additionalProperties": false,
+ "description": "SPHN Concept 'AssessmentResult'",
+ "properties": {
+ "id": {
+ "description": "ID of SPHN Concept 'AssessmentResult'",
+ "type": "string"
+ },
+ "sphn:hasCode": {
+ "description": "SPHN Concept 'Code'/SPHN Concept 'Terminology'",
+ "oneOf": [
+ {
+ "additionalProperties": false,
+ "description": "SPHN Concept 'Code'",
+ "properties": {
+ "id": {
+ "description": "ID of SPHN Concept 'Code'",
+ "type": "string"
+ },
+ "sourceConceptID": {
+ "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
+ "type": "string"
+ },
+ "sphn:hasCodingSystemAndVersion": {
+ "description": "Value for 'hasCodingSystemAndVersion' property",
+ "type": "string"
+ },
+ "sphn:hasIdentifier": {
+ "description": "Value for 'hasIdentifier' property",
+ "type": "string"
+ },
+ "sphn:hasName": {
+ "description": "Value for 'hasName' property",
+ "type": "string"
+ }
+ },
+ "required": [
+ "id",
+ "sphn:hasCodingSystemAndVersion",
+ "sphn:hasIdentifier"
+ ],
+ "type": "object"
+ },
+ {
+ "additionalProperties": false,
+ "description": "SPHN Concept 'Terminology'",
+ "properties": {
+ "iri": {
+ "description": "IRI of SPHN Concept 'Terminology'",
+ "type": "string"
+ },
+ "sourceConceptID": {
+ "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
+ "type": "string"
+ },
+ "termid": {
+ "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
+ "type": "string"
+ }
+ },
+ "required": [
+ "iri",
+ "termid"
+ ],
+ "type": "object"
+ }
+ ],
+ "type": "object"
+ },
+ "sphn:hasQuantity": {
"additionalProperties": false,
- "description": "SPHN Concept 'AssessmentResult'",
+ "description": "SPHN Concept 'Quantity'",
"properties": {
"id": {
- "description": "ID of SPHN Concept 'AssessmentResult'",
+ "description": "ID of SPHN Concept 'Quantity'",
"type": "string"
},
- "sphn:hasCode": {
- "description": "SPHN Concept 'Code'/SPHN Concept 'Terminology'",
- "oneOf": [
- {
+ "sphn:hasComparator": {
+ "additionalProperties": false,
+ "description": "Value Set for property 'hasComparator'",
+ "properties": {
+ "iri": {
+ "description": "IRI for 'hasComparator' property",
+ "enum": [
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
+ ],
+ "type": "string"
+ }
+ },
+ "required": [
+ "iri"
+ ],
+ "type": "object"
+ },
+ "sphn:hasUnit": {
+ "additionalProperties": false,
+ "description": "SPHN Concept 'Unit'",
+ "properties": {
+ "id": {
+ "description": "ID of SPHN Concept 'Unit'",
+ "type": "string"
+ },
+ "sphn:hasCode": {
"additionalProperties": false,
- "description": "SPHN Concept 'Code'",
+ "description": "Schema for property 'hasCode'",
"properties": {
- "id": {
- "description": "ID of SPHN Concept 'Code'",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "sphn:hasCodingSystemAndVersion": {
- "description": "Value for 'hasCodingSystemAndVersion' property",
- "type": "string"
- },
- "sphn:hasIdentifier": {
- "description": "Value for 'hasIdentifier' property",
- "type": "string"
- },
- "sphn:hasName": {
- "description": "Value for 'hasName' property",
- "type": "string"
- }
- },
- "required": [
- "id",
- "sphn:hasCodingSystemAndVersion",
- "sphn:hasIdentifier"
- ],
- "type": "object"
- },
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'Terminology'",
- "properties": {
- "iri": {
- "description": "IRI of SPHN Concept 'Terminology'",
+ "iri": {
+ "description": "UCUM IRI for 'hasCode' property",
"type": "string"
},
"sourceConceptID": {
@@ -4675,359 +4466,32 @@
],
"type": "object"
}
- ],
- "type": "object"
- },
- "sphn:hasQuantity": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Quantity'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Quantity'",
- "type": "string"
- },
- "sphn:hasComparator": {
- "additionalProperties": false,
- "description": "Value Set for property 'hasComparator'",
- "properties": {
- "iri": {
- "description": "IRI for 'hasComparator' property",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
- ],
- "type": "string"
- }
- },
- "required": [
- "iri"
- ],
- "type": "object"
- },
- "sphn:hasUnit": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Unit'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Unit'",
- "type": "string"
- },
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "Schema for property 'hasCode'",
- "properties": {
- "iri": {
- "description": "UCUM IRI for 'hasCode' property",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- }
- },
- "required": [
- "id",
- "sphn:hasCode"
- ],
- "type": "object"
- },
- "sphn:hasValue": {
- "description": "Value for 'hasValue' property",
- "type": "number"
- }
- },
- "required": [
- "id",
- "sphn:hasUnit",
- "sphn:hasValue"
- ],
- "type": "object"
- },
- "sphn:hasStringValue": {
- "description": "Value for 'hasStringValue' property",
- "type": "string"
- },
- "target_concept": {
- "description": "IRI for Concept 'AssessmentResult'",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult"
- ],
- "type": "string"
- }
- },
- "required": [
- "id",
- "target_concept"
- ],
- "type": "object"
- },
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'TumorGradeAssessmentResult'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'TumorGradeAssessmentResult'",
- "type": "string"
- },
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Terminology'",
- "properties": {
- "iri": {
- "description": "IRI of SPHN Concept 'Terminology'",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- },
- "sphn:hasQuantity": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Quantity'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Quantity'",
- "type": "string"
- },
- "sphn:hasComparator": {
- "additionalProperties": false,
- "description": "Value Set for property 'hasComparator'",
- "properties": {
- "iri": {
- "description": "IRI for 'hasComparator' property",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
- ],
- "type": "string"
- }
- },
- "required": [
- "iri"
- ],
- "type": "object"
- },
- "sphn:hasUnit": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Unit'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Unit'",
- "type": "string"
- },
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "Schema for property 'hasCode'",
- "properties": {
- "iri": {
- "description": "UCUM IRI for 'hasCode' property",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- }
- },
- "required": [
- "id",
- "sphn:hasCode"
- ],
- "type": "object"
- },
- "sphn:hasValue": {
- "description": "Value for 'hasValue' property",
- "type": "number"
- }
},
"required": [
"id",
- "sphn:hasUnit",
- "sphn:hasValue"
+ "sphn:hasCode"
],
"type": "object"
},
- "sphn:hasStringValue": {
- "description": "Value for 'hasStringValue' property",
- "type": "string"
- },
- "target_concept": {
- "description": "IRI for Concept 'TumorGradeAssessmentResult'",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult"
- ],
- "type": "string"
+ "sphn:hasValue": {
+ "description": "Value for 'hasValue' property",
+ "type": "number"
}
},
"required": [
"id",
- "target_concept"
+ "sphn:hasUnit",
+ "sphn:hasValue"
],
"type": "object"
},
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'TumorStageAssessmentResult'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'TumorStageAssessmentResult'",
- "type": "string"
- },
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Terminology'",
- "properties": {
- "iri": {
- "description": "IRI of SPHN Concept 'Terminology'",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- },
- "sphn:hasQuantity": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Quantity'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Quantity'",
- "type": "string"
- },
- "sphn:hasComparator": {
- "additionalProperties": false,
- "description": "Value Set for property 'hasComparator'",
- "properties": {
- "iri": {
- "description": "IRI for 'hasComparator' property",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
- ],
- "type": "string"
- }
- },
- "required": [
- "iri"
- ],
- "type": "object"
- },
- "sphn:hasUnit": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Unit'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Unit'",
- "type": "string"
- },
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "Schema for property 'hasCode'",
- "properties": {
- "iri": {
- "description": "UCUM IRI for 'hasCode' property",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- }
- },
- "required": [
- "id",
- "sphn:hasCode"
- ],
- "type": "object"
- },
- "sphn:hasValue": {
- "description": "Value for 'hasValue' property",
- "type": "number"
- }
- },
- "required": [
- "id",
- "sphn:hasUnit",
- "sphn:hasValue"
- ],
- "type": "object"
- },
- "sphn:hasStringValue": {
- "description": "Value for 'hasStringValue' property",
- "type": "string"
- },
- "target_concept": {
- "description": "IRI for Concept 'TumorStageAssessmentResult'",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult"
- ],
- "type": "string"
- }
- },
- "required": [
- "id",
- "target_concept"
- ],
- "type": "object"
+ "sphn:hasStringValue": {
+ "description": "Value for 'hasStringValue' property",
+ "type": "string"
}
+ },
+ "required": [
+ "id"
],
"type": "object"
}
@@ -25130,6 +24594,82 @@
],
"type": "object"
},
+ "sphn:hasOrganism": {
+ "additionalProperties": false,
+ "description": "SPHN Concept 'Organism'",
+ "properties": {
+ "id": {
+ "description": "ID of SPHN Concept 'Organism'",
+ "type": "string"
+ },
+ "sphn:hasCode": {
+ "description": "SPHN Concept 'Code'/SPHN Concept 'Terminology'",
+ "oneOf": [
+ {
+ "additionalProperties": false,
+ "description": "SPHN Concept 'Code'",
+ "properties": {
+ "id": {
+ "description": "ID of SPHN Concept 'Code'",
+ "type": "string"
+ },
+ "sourceConceptID": {
+ "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
+ "type": "string"
+ },
+ "sphn:hasCodingSystemAndVersion": {
+ "description": "Value for 'hasCodingSystemAndVersion' property",
+ "type": "string"
+ },
+ "sphn:hasIdentifier": {
+ "description": "Value for 'hasIdentifier' property",
+ "type": "string"
+ },
+ "sphn:hasName": {
+ "description": "Value for 'hasName' property",
+ "type": "string"
+ }
+ },
+ "required": [
+ "id",
+ "sphn:hasCodingSystemAndVersion",
+ "sphn:hasIdentifier"
+ ],
+ "type": "object"
+ },
+ {
+ "additionalProperties": false,
+ "description": "SPHN Concept 'Terminology'",
+ "properties": {
+ "iri": {
+ "description": "IRI of SPHN Concept 'Terminology'",
+ "type": "string"
+ },
+ "sourceConceptID": {
+ "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
+ "type": "string"
+ },
+ "termid": {
+ "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
+ "type": "string"
+ }
+ },
+ "required": [
+ "iri",
+ "termid"
+ ],
+ "type": "object"
+ }
+ ],
+ "type": "object"
+ }
+ },
+ "required": [
+ "id",
+ "sphn:hasCode"
+ ],
+ "type": "object"
+ },
"sphn:hasPresenceCode": {
"additionalProperties": false,
"description": "SPHN Concept 'Terminology'",
@@ -26876,6 +26416,9 @@
"properties": {
"iri": {
"description": "UCUM IRI for 'hasCode' property",
+ "enum": [
+ "https://biomedit.ch/rdf/sphn-resource/ucum/Lpermin"
+ ],
"type": "string"
},
"sourceConceptID": {
@@ -28155,6 +27698,9 @@
"properties": {
"iri": {
"description": "UCUM IRI for 'hasCode' property",
+ "enum": [
+ "https://biomedit.ch/rdf/sphn-resource/ucum/cblnbcbr"
+ ],
"type": "string"
},
"sourceConceptID": {
@@ -33079,309 +32625,49 @@
"sphn:hasResult": {
"description": "List of 'hasResult' properties",
"items": {
- "description": "SPHN Concept 'AssessmentResult'/SPHN Concept 'TumorGradeAssessmentResult'/SPHN Concept 'TumorStageAssessmentResult'",
- "oneOf": [
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'AssessmentResult'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'AssessmentResult'",
- "type": "string"
- },
- "sphn:hasCode": {
- "description": "SPHN Concept 'Code'/SPHN Concept 'Terminology'",
- "oneOf": [
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'Code'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Code'",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "sphn:hasCodingSystemAndVersion": {
- "description": "Value for 'hasCodingSystemAndVersion' property",
- "type": "string"
- },
- "sphn:hasIdentifier": {
- "description": "Value for 'hasIdentifier' property",
- "type": "string"
- },
- "sphn:hasName": {
- "description": "Value for 'hasName' property",
- "type": "string"
- }
- },
- "required": [
- "id",
- "sphn:hasCodingSystemAndVersion",
- "sphn:hasIdentifier"
- ],
- "type": "object"
- },
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'Terminology'",
- "properties": {
- "iri": {
- "description": "IRI of SPHN Concept 'Terminology'",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- }
- ],
- "type": "object"
- },
- "sphn:hasQuantity": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Quantity'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Quantity'",
- "type": "string"
- },
- "sphn:hasComparator": {
- "additionalProperties": false,
- "description": "Value Set for property 'hasComparator'",
- "properties": {
- "iri": {
- "description": "IRI for 'hasComparator' property",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
- ],
- "type": "string"
- }
- },
- "required": [
- "iri"
- ],
- "type": "object"
- },
- "sphn:hasUnit": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Unit'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Unit'",
- "type": "string"
- },
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "Schema for property 'hasCode'",
- "properties": {
- "iri": {
- "description": "UCUM IRI for 'hasCode' property",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- }
- },
- "required": [
- "id",
- "sphn:hasCode"
- ],
- "type": "object"
- },
- "sphn:hasValue": {
- "description": "Value for 'hasValue' property",
- "type": "number"
- }
- },
- "required": [
- "id",
- "sphn:hasUnit",
- "sphn:hasValue"
- ],
- "type": "object"
- },
- "sphn:hasStringValue": {
- "description": "Value for 'hasStringValue' property",
- "type": "string"
- },
- "target_concept": {
- "description": "IRI for Concept 'AssessmentResult'",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult"
- ],
- "type": "string"
- }
- },
- "required": [
- "id",
- "target_concept"
- ],
- "type": "object"
- },
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'TumorGradeAssessmentResult'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'TumorGradeAssessmentResult'",
- "type": "string"
- },
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Terminology'",
- "properties": {
- "iri": {
- "description": "IRI of SPHN Concept 'Terminology'",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- },
- "sphn:hasQuantity": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Quantity'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Quantity'",
- "type": "string"
- },
- "sphn:hasComparator": {
- "additionalProperties": false,
- "description": "Value Set for property 'hasComparator'",
- "properties": {
- "iri": {
- "description": "IRI for 'hasComparator' property",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
- ],
- "type": "string"
- }
- },
- "required": [
- "iri"
- ],
- "type": "object"
- },
- "sphn:hasUnit": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Unit'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Unit'",
- "type": "string"
- },
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "Schema for property 'hasCode'",
- "properties": {
- "iri": {
- "description": "UCUM IRI for 'hasCode' property",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- }
- },
- "required": [
- "id",
- "sphn:hasCode"
- ],
- "type": "object"
+ "additionalProperties": false,
+ "description": "SPHN Concept 'AssessmentResult'",
+ "properties": {
+ "id": {
+ "description": "ID of SPHN Concept 'AssessmentResult'",
+ "type": "string"
+ },
+ "sphn:hasCode": {
+ "description": "SPHN Concept 'Code'/SPHN Concept 'Terminology'",
+ "oneOf": [
+ {
+ "additionalProperties": false,
+ "description": "SPHN Concept 'Code'",
+ "properties": {
+ "id": {
+ "description": "ID of SPHN Concept 'Code'",
+ "type": "string"
},
- "sphn:hasValue": {
- "description": "Value for 'hasValue' property",
- "type": "number"
+ "sourceConceptID": {
+ "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
+ "type": "string"
+ },
+ "sphn:hasCodingSystemAndVersion": {
+ "description": "Value for 'hasCodingSystemAndVersion' property",
+ "type": "string"
+ },
+ "sphn:hasIdentifier": {
+ "description": "Value for 'hasIdentifier' property",
+ "type": "string"
+ },
+ "sphn:hasName": {
+ "description": "Value for 'hasName' property",
+ "type": "string"
}
},
"required": [
"id",
- "sphn:hasUnit",
- "sphn:hasValue"
+ "sphn:hasCodingSystemAndVersion",
+ "sphn:hasIdentifier"
],
"type": "object"
},
- "sphn:hasStringValue": {
- "description": "Value for 'hasStringValue' property",
- "type": "string"
- },
- "target_concept": {
- "description": "IRI for Concept 'TumorGradeAssessmentResult'",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult"
- ],
- "type": "string"
- }
- },
- "required": [
- "id",
- "target_concept"
- ],
- "type": "object"
- },
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'TumorStageAssessmentResult'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'TumorStageAssessmentResult'",
- "type": "string"
- },
- "sphn:hasCode": {
+ {
"additionalProperties": false,
"description": "SPHN Concept 'Terminology'",
"properties": {
@@ -33403,103 +32689,95 @@
"termid"
],
"type": "object"
+ }
+ ],
+ "type": "object"
+ },
+ "sphn:hasQuantity": {
+ "additionalProperties": false,
+ "description": "SPHN Concept 'Quantity'",
+ "properties": {
+ "id": {
+ "description": "ID of SPHN Concept 'Quantity'",
+ "type": "string"
},
- "sphn:hasQuantity": {
+ "sphn:hasComparator": {
"additionalProperties": false,
- "description": "SPHN Concept 'Quantity'",
+ "description": "Value Set for property 'hasComparator'",
+ "properties": {
+ "iri": {
+ "description": "IRI for 'hasComparator' property",
+ "enum": [
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
+ ],
+ "type": "string"
+ }
+ },
+ "required": [
+ "iri"
+ ],
+ "type": "object"
+ },
+ "sphn:hasUnit": {
+ "additionalProperties": false,
+ "description": "SPHN Concept 'Unit'",
"properties": {
"id": {
- "description": "ID of SPHN Concept 'Quantity'",
+ "description": "ID of SPHN Concept 'Unit'",
"type": "string"
},
- "sphn:hasComparator": {
+ "sphn:hasCode": {
"additionalProperties": false,
- "description": "Value Set for property 'hasComparator'",
+ "description": "Schema for property 'hasCode'",
"properties": {
"iri": {
- "description": "IRI for 'hasComparator' property",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
- ],
+ "description": "UCUM IRI for 'hasCode' property",
"type": "string"
- }
- },
- "required": [
- "iri"
- ],
- "type": "object"
- },
- "sphn:hasUnit": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Unit'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Unit'",
+ },
+ "sourceConceptID": {
+ "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
"type": "string"
},
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "Schema for property 'hasCode'",
- "properties": {
- "iri": {
- "description": "UCUM IRI for 'hasCode' property",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
+ "termid": {
+ "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
+ "type": "string"
}
},
"required": [
- "id",
- "sphn:hasCode"
+ "iri",
+ "termid"
],
"type": "object"
- },
- "sphn:hasValue": {
- "description": "Value for 'hasValue' property",
- "type": "number"
}
},
"required": [
"id",
- "sphn:hasUnit",
- "sphn:hasValue"
+ "sphn:hasCode"
],
"type": "object"
},
- "sphn:hasStringValue": {
- "description": "Value for 'hasStringValue' property",
- "type": "string"
- },
- "target_concept": {
- "description": "IRI for Concept 'TumorStageAssessmentResult'",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult"
- ],
- "type": "string"
+ "sphn:hasValue": {
+ "description": "Value for 'hasValue' property",
+ "type": "number"
}
},
"required": [
"id",
- "target_concept"
+ "sphn:hasUnit",
+ "sphn:hasValue"
],
"type": "object"
+ },
+ "sphn:hasStringValue": {
+ "description": "Value for 'hasStringValue' property",
+ "type": "string"
}
+ },
+ "required": [
+ "id"
],
"type": "object"
},
@@ -35133,182 +34411,49 @@
"sphn:hasResult": {
"description": "List of 'hasResult' properties",
"items": {
- "description": "SPHN Concept 'AssessmentResult'/SPHN Concept 'TumorGradeAssessmentResult'/SPHN Concept 'TumorStageAssessmentResult'",
- "oneOf": [
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'AssessmentResult'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'AssessmentResult'",
- "type": "string"
- },
- "sphn:hasCode": {
- "description": "SPHN Concept 'Code'/SPHN Concept 'Terminology'",
- "oneOf": [
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'Code'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Code'",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "sphn:hasCodingSystemAndVersion": {
- "description": "Value for 'hasCodingSystemAndVersion' property",
- "type": "string"
- },
- "sphn:hasIdentifier": {
- "description": "Value for 'hasIdentifier' property",
- "type": "string"
- },
- "sphn:hasName": {
- "description": "Value for 'hasName' property",
- "type": "string"
- }
- },
- "required": [
- "id",
- "sphn:hasCodingSystemAndVersion",
- "sphn:hasIdentifier"
- ],
- "type": "object"
- },
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'Terminology'",
- "properties": {
- "iri": {
- "description": "IRI of SPHN Concept 'Terminology'",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- }
- ],
- "type": "object"
- },
- "sphn:hasQuantity": {
+ "additionalProperties": false,
+ "description": "SPHN Concept 'AssessmentResult'",
+ "properties": {
+ "id": {
+ "description": "ID of SPHN Concept 'AssessmentResult'",
+ "type": "string"
+ },
+ "sphn:hasCode": {
+ "description": "SPHN Concept 'Code'/SPHN Concept 'Terminology'",
+ "oneOf": [
+ {
"additionalProperties": false,
- "description": "SPHN Concept 'Quantity'",
+ "description": "SPHN Concept 'Code'",
"properties": {
"id": {
- "description": "ID of SPHN Concept 'Quantity'",
+ "description": "ID of SPHN Concept 'Code'",
"type": "string"
},
- "sphn:hasComparator": {
- "additionalProperties": false,
- "description": "Value Set for property 'hasComparator'",
- "properties": {
- "iri": {
- "description": "IRI for 'hasComparator' property",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
- ],
- "type": "string"
- }
- },
- "required": [
- "iri"
- ],
- "type": "object"
+ "sourceConceptID": {
+ "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
+ "type": "string"
+ },
+ "sphn:hasCodingSystemAndVersion": {
+ "description": "Value for 'hasCodingSystemAndVersion' property",
+ "type": "string"
},
- "sphn:hasUnit": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Unit'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Unit'",
- "type": "string"
- },
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "Schema for property 'hasCode'",
- "properties": {
- "iri": {
- "description": "UCUM IRI for 'hasCode' property",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- }
- },
- "required": [
- "id",
- "sphn:hasCode"
- ],
- "type": "object"
+ "sphn:hasIdentifier": {
+ "description": "Value for 'hasIdentifier' property",
+ "type": "string"
},
- "sphn:hasValue": {
- "description": "Value for 'hasValue' property",
- "type": "number"
+ "sphn:hasName": {
+ "description": "Value for 'hasName' property",
+ "type": "string"
}
},
"required": [
"id",
- "sphn:hasUnit",
- "sphn:hasValue"
+ "sphn:hasCodingSystemAndVersion",
+ "sphn:hasIdentifier"
],
"type": "object"
},
- "sphn:hasStringValue": {
- "description": "Value for 'hasStringValue' property",
- "type": "string"
- },
- "target_concept": {
- "description": "IRI for Concept 'AssessmentResult'",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult"
- ],
- "type": "string"
- }
- },
- "required": [
- "id",
- "target_concept"
- ],
- "type": "object"
- },
- {
- "additionalProperties": false,
- "description": "SPHN Concept 'TumorGradeAssessmentResult'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'TumorGradeAssessmentResult'",
- "type": "string"
- },
- "sphn:hasCode": {
+ {
"additionalProperties": false,
"description": "SPHN Concept 'Terminology'",
"properties": {
@@ -35330,230 +34475,95 @@
"termid"
],
"type": "object"
- },
- "sphn:hasQuantity": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Quantity'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Quantity'",
- "type": "string"
- },
- "sphn:hasComparator": {
- "additionalProperties": false,
- "description": "Value Set for property 'hasComparator'",
- "properties": {
- "iri": {
- "description": "IRI for 'hasComparator' property",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
- ],
- "type": "string"
- }
- },
- "required": [
- "iri"
- ],
- "type": "object"
- },
- "sphn:hasUnit": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Unit'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Unit'",
- "type": "string"
- },
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "Schema for property 'hasCode'",
- "properties": {
- "iri": {
- "description": "UCUM IRI for 'hasCode' property",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
- }
- },
- "required": [
- "id",
- "sphn:hasCode"
- ],
- "type": "object"
- },
- "sphn:hasValue": {
- "description": "Value for 'hasValue' property",
- "type": "number"
- }
- },
- "required": [
- "id",
- "sphn:hasUnit",
- "sphn:hasValue"
- ],
- "type": "object"
- },
- "sphn:hasStringValue": {
- "description": "Value for 'hasStringValue' property",
- "type": "string"
- },
- "target_concept": {
- "description": "IRI for Concept 'TumorGradeAssessmentResult'",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult"
- ],
- "type": "string"
}
- },
- "required": [
- "id",
- "target_concept"
],
"type": "object"
},
- {
+ "sphn:hasQuantity": {
"additionalProperties": false,
- "description": "SPHN Concept 'TumorStageAssessmentResult'",
+ "description": "SPHN Concept 'Quantity'",
"properties": {
"id": {
- "description": "ID of SPHN Concept 'TumorStageAssessmentResult'",
+ "description": "ID of SPHN Concept 'Quantity'",
"type": "string"
},
- "sphn:hasCode": {
+ "sphn:hasComparator": {
"additionalProperties": false,
- "description": "SPHN Concept 'Terminology'",
+ "description": "Value Set for property 'hasComparator'",
"properties": {
"iri": {
- "description": "IRI of SPHN Concept 'Terminology'",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
+ "description": "IRI for 'hasComparator' property",
+ "enum": [
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
+ "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
+ ],
"type": "string"
}
},
"required": [
- "iri",
- "termid"
+ "iri"
],
"type": "object"
},
- "sphn:hasQuantity": {
+ "sphn:hasUnit": {
"additionalProperties": false,
- "description": "SPHN Concept 'Quantity'",
+ "description": "SPHN Concept 'Unit'",
"properties": {
"id": {
- "description": "ID of SPHN Concept 'Quantity'",
+ "description": "ID of SPHN Concept 'Unit'",
"type": "string"
},
- "sphn:hasComparator": {
+ "sphn:hasCode": {
"additionalProperties": false,
- "description": "Value Set for property 'hasComparator'",
+ "description": "Schema for property 'hasCode'",
"properties": {
"iri": {
- "description": "IRI for 'hasComparator' property",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan",
- "https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual"
- ],
+ "description": "UCUM IRI for 'hasCode' property",
"type": "string"
- }
- },
- "required": [
- "iri"
- ],
- "type": "object"
- },
- "sphn:hasUnit": {
- "additionalProperties": false,
- "description": "SPHN Concept 'Unit'",
- "properties": {
- "id": {
- "description": "ID of SPHN Concept 'Unit'",
+ },
+ "sourceConceptID": {
+ "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
"type": "string"
},
- "sphn:hasCode": {
- "additionalProperties": false,
- "description": "Schema for property 'hasCode'",
- "properties": {
- "iri": {
- "description": "UCUM IRI for 'hasCode' property",
- "type": "string"
- },
- "sourceConceptID": {
- "description": "The ID of the SPHN/Project concept where this code has been used, e.g. 123",
- "type": "string"
- },
- "termid": {
- "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
- "type": "string"
- }
- },
- "required": [
- "iri",
- "termid"
- ],
- "type": "object"
+ "termid": {
+ "description": "Unique ID for the given IRI. String format follows convention: <coding_system>-<identifier>",
+ "type": "string"
}
},
"required": [
- "id",
- "sphn:hasCode"
+ "iri",
+ "termid"
],
"type": "object"
- },
- "sphn:hasValue": {
- "description": "Value for 'hasValue' property",
- "type": "number"
}
},
"required": [
"id",
- "sphn:hasUnit",
- "sphn:hasValue"
+ "sphn:hasCode"
],
"type": "object"
},
- "sphn:hasStringValue": {
- "description": "Value for 'hasStringValue' property",
- "type": "string"
- },
- "target_concept": {
- "description": "IRI for Concept 'TumorStageAssessmentResult'",
- "enum": [
- "https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult"
- ],
- "type": "string"
+ "sphn:hasValue": {
+ "description": "Value for 'hasValue' property",
+ "type": "number"
}
},
"required": [
"id",
- "target_concept"
+ "sphn:hasUnit",
+ "sphn:hasValue"
],
"type": "object"
+ },
+ "sphn:hasStringValue": {
+ "description": "Value for 'hasStringValue' property",
+ "type": "string"
}
+ },
+ "required": [
+ "id"
],
"type": "object"
},
diff --git a/schemas/pre-release-testing/rml_mapping.ttl b/schemas/pre-release-testing/rml_mapping.ttl
index 100816f312b132fd0fa79fcf3e9f3eb8bd487eb8..ea9c67b940d725b5550eb34e758c0b1022ef456b 100644
--- a/schemas/pre-release-testing/rml_mapping.ttl
+++ b/schemas/pre-release-testing/rml_mapping.ttl
@@ -69,11 +69,11 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-schema/sphn/2025/1" ] ;
rr:predicate dct:conformsTo ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnDataProvider ] ;
- rr:predicate sphn:hasDataProvider ],
[ rr:objectMap [ rml:reference "creationTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasExtractionDateTime ] ;
+ rr:predicate sphn:hasExtractionDateTime ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnDataProvider ] ;
+ rr:predicate sphn:hasDataProvider ] ;
rr:subjectMap [ rr:class sphn:DataRelease ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataRelease-{id}" ] .
@@ -81,24 +81,24 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AccessDevicePresence[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasRestingPoint.id}" ] ;
rr:predicate sphn:hasRestingPoint ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{sphn:hasMedicalDevice.id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasInsertionPoint.id}" ] ;
- rr:predicate sphn:hasInsertionPoint ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{sphn:hasMedicalDevice.id}" ] ;
- rr:predicate sphn:hasMedicalDevice ] ;
+ rr:predicate sphn:hasInsertionPoint ] ;
rr:subjectMap [ rr:class sphn:AccessDevicePresence ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevicePresence-{id}" ] .
@@ -144,14 +144,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AccessDevicePresence[*].sphn:hasMedicalDevice" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ] ;
rr:subjectMap [ rr:class sphn:AccessDevice ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}" ] .
@@ -159,15 +159,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AccessDevicePresence[*].sphn:hasMedicalDevice.sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -184,18 +184,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AccessDevicePresence[*].sphn:hasMedicalDevice.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicate sphn:hasVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasDescription ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -250,19 +250,19 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AdministrativeCase[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CareHandling-{sphn:hasCareHandling.id}" ] ;
rr:predicate sphn:hasCareHandling ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Discharge-{sphn:hasDischarge.id}" ] ;
rr:predicate sphn:hasDischarge ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Admission-{sphn:hasAdmission.id}" ] ;
- rr:predicate sphn:hasAdmission ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Admission-{sphn:hasAdmission.id}" ] ;
+ rr:predicate sphn:hasAdmission ] ;
rr:subjectMap [ rr:class sphn:AdministrativeCase ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{id}" ] .
@@ -270,11 +270,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AdministrativeCase[*].sphn:hasAdmission" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{sphn:hasOriginLocation.id}" ] ;
- rr:predicate sphn:hasOriginLocation ],
- [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ] ;
+ rr:predicate sphn:hasDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{sphn:hasOriginLocation.id}" ] ;
+ rr:predicate sphn:hasOriginLocation ] ;
rr:subjectMap [ rr:class sphn:Admission ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Admission-{id}" ] .
@@ -323,11 +323,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AdministrativeCase[*].sphn:hasDischarge" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{sphn:hasTargetLocation.id}" ] ;
+ rr:predicate sphn:hasTargetLocation ],
+ [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{sphn:hasTargetLocation.id}" ] ;
- rr:predicate sphn:hasTargetLocation ] ;
+ rr:predicate sphn:hasDateTime ] ;
rr:subjectMap [ rr:class sphn:Discharge ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Discharge-{id}" ] .
@@ -356,10 +356,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AdministrativeSex[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasRecordDateTime ],
@@ -383,28 +383,28 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdverseEvent-{id}-sphn-Code-{sphn:hasSeverityCode.id}" ] ;
rr:predicate sphn:hasSeverityCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdverseEvent-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
[ rr:objectMap [ rml:reference "sphn:hasOnsetDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasOnsetDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdverseEvent-{id}-sphn-Code-{sphn:hasSeverityCode.termid}" ] ;
rr:predicate sphn:hasSeverityCode ],
[ rr:objectMap [ rml:reference "sphn:hasConsequences.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasConsequences ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasIntervention" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIntervention ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasOutcome.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasOutcome ] ;
+ rr:predicate sphn:hasOutcome ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdverseEvent-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:AdverseEvent ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdverseEvent-{id}" ] .
@@ -428,12 +428,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AdverseEvent[*].sphn:hasSeverityCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ] ;
@@ -453,15 +453,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Age[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasDeterminationDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDeterminationDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDeterminationDateTime ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ] ;
+ rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:Age ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Age-{id}" ] .
@@ -472,11 +472,11 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -502,24 +502,24 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Allergy[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasLastReactionDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasLastReactionDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergen-{sphn:hasAllergen.id}" ] ;
- rr:predicate sphn:hasAllergen ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergy-{id}-sphn-Code-{sphn:hasSeverityCode.termid}" ] ;
+ rr:predicate sphn:hasSeverityCode ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasFirstRecordDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasFirstRecordDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergy-{id}-sphn-Code-{sphn:hasReactionTypeCode.termid}" ] ;
rr:predicate sphn:hasReactionTypeCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasLastReactionDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasLastReactionDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergen-{sphn:hasAllergen.id}" ] ;
+ rr:predicate sphn:hasAllergen ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergy-{id}-sphn-Code-{sphn:hasVerificationStatusCode.termid}" ] ;
- rr:predicate sphn:hasVerificationStatusCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergy-{id}-sphn-Code-{sphn:hasSeverityCode.termid}" ] ;
- rr:predicate sphn:hasSeverityCode ] ;
+ rr:predicate sphn:hasVerificationStatusCode ] ;
rr:subjectMap [ rr:class sphn:Allergy ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergy-{id}" ] .
@@ -529,27 +529,27 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AllergyEpisode-{id}-sphn-Code-{sphn:hasSeverityCode.termid}" ] ;
rr:predicate sphn:hasSeverityCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Exposure-{sphn:hasExposure.id}" ] ;
+ rr:predicate sphn:hasExposure ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergen-{sphn:hasAllergen.id}" ] ;
rr:predicate sphn:hasAllergen ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Exposure-{sphn:hasExposure.id}" ] ;
- rr:predicate sphn:hasExposure ],
- [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AllergyEpisode-{id}-sphn-Code-{sphn:hasManifestationCode.termid}" ] ;
+ rr:predicate sphn:hasManifestationCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
rr:predicate sphn:hasBodySite ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AllergyEpisode-{id}-sphn-Code-{sphn:hasCertaintyCode.termid}" ] ;
rr:predicate sphn:hasCertaintyCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasDuration.id}" ] ;
rr:predicate sphn:hasDuration ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AllergyEpisode-{id}-sphn-Code-{sphn:hasManifestationCode.termid}" ] ;
- rr:predicate sphn:hasManifestationCode ] ;
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:AllergyEpisode ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AllergyEpisode-{id}" ] .
@@ -557,9 +557,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AllergyEpisode[*].sphn:hasAllergen" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergen-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergen-{id}-sphn-Code-{sphn:hasCode[*].id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergen-{id}-sphn-Code-{sphn:hasCode[*].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergen-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Allergen ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergen-{id}" ] .
@@ -568,15 +568,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AllergyEpisode[*].sphn:hasAllergen.sphn:hasCode[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergen-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -640,11 +640,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AllergyEpisode[*].sphn:hasDuration" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ] ;
@@ -702,15 +702,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Allergy[*].sphn:hasAllergen.sphn:hasCode[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergen-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -754,22 +754,22 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasSample.id}" ] ;
+ rr:predicate sphn:hasSample ],
+ [ rr:objectMap [ rml:reference "sphn:hasReportDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasReportDateTime ],
[ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasSample.id}" ] ;
- rr:predicate sphn:hasSample ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityLabTest-{sphn:hasLabTest[*].id}" ] ;
rr:predicate sphn:hasLabTest ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasReportDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasReportDateTime ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:AntimicrobialSusceptibilityLabTestEvent ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityLabTestEvent-{id}" ] .
@@ -781,12 +781,12 @@
rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Substance')].id}" ] ;
rr:predicate sphn:hasChemicalAgent ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Drug-{sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].id}" ] ;
+ rr:predicate sphn:hasChemicalAgent ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasTestKit.id}" ] ;
rr:predicate sphn:hasTestKit ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasInstrument.id}" ] ;
rr:predicate sphn:hasInstrument ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Drug-{sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].id}" ] ;
- rr:predicate sphn:hasChemicalAgent ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityResult-{sphn:hasResult[*].id}" ] ;
rr:predicate sphn:hasResult ] ;
rr:subjectMap [ rr:class sphn:AntimicrobialSusceptibilityLabTest ;
@@ -796,16 +796,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasInactiveIngredient[*].id}" ] ;
- rr:predicate sphn:hasInactiveIngredient ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasActiveIngredient[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasActiveIngredient[*].id}" ] ;
rr:predicate sphn:hasActiveIngredient ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{sphn:hasArticle.id}" ] ;
- rr:predicate sphn:hasArticle ] ;
+ rr:predicate sphn:hasArticle ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasInactiveIngredient[*].id}" ] ;
+ rr:predicate sphn:hasInactiveIngredient ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ] ;
rr:subjectMap [ rr:class sphn:Drug ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Drug-{id}" ] .
@@ -813,15 +813,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].sphn:hasActiveIngredient[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasGenericName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasGenericName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasGenericName ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:Substance ;
@@ -831,15 +831,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].sphn:hasActiveIngredient[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -856,14 +856,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].sphn:hasActiveIngredient[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -889,15 +889,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].sphn:hasArticle" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{sphn:hasManufacturedDoseForm.id}" ] ;
- rr:predicate sphn:hasManufacturedDoseForm ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{sphn:hasManufacturedDoseForm.id}" ] ;
+ rr:predicate sphn:hasManufacturedDoseForm ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:DrugArticle ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{id}" ] .
@@ -905,15 +905,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].sphn:hasArticle.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -921,9 +921,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].sphn:hasArticle.sphn:hasManufacturedDoseForm" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:PharmaceuticalDoseForm ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{id}" ] .
@@ -932,15 +932,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].sphn:hasArticle.sphn:hasManufacturedDoseForm.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -957,17 +957,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].sphn:hasInactiveIngredient[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
[ rr:objectMap [ rml:reference "sphn:hasGenericName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasGenericName ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:Substance ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}" ] .
@@ -1000,14 +1000,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].sphn:hasInactiveIngredient[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -1035,12 +1035,12 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -1066,17 +1066,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Substance')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rml:reference "sphn:hasGenericName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasGenericName ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:Substance ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}" ] .
@@ -1084,15 +1084,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Substance')].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -1109,11 +1109,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasChemicalAgent[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Substance')].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ] ;
@@ -1155,11 +1155,11 @@
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
- rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:LabAnalyzer ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}" ] .
@@ -1171,12 +1171,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -1193,18 +1193,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
+ rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ] ;
+ rr:predicate sphn:hasUniformResourceLocator ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -1215,12 +1215,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -1237,20 +1237,20 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceValue-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].id}" ] ;
- rr:predicate sphn:hasNumericalReference ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStandardGuideline" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasStandardGuideline ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceRange-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].id}" ] ;
rr:predicate sphn:hasNumericalReference ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasStringValue ],
- [ rr:objectMap [ rml:reference "sphn:hasStandardGuideline" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStandardGuideline ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceValue-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].id}" ] ;
+ rr:predicate sphn:hasNumericalReference ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ] ;
rr:subjectMap [ rr:class sphn:AntimicrobialSusceptibilityResult ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityResult-{id}" ] .
@@ -1280,12 +1280,12 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -1353,14 +1353,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -1386,11 +1386,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ] ;
@@ -1421,12 +1421,12 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:LabAnalyzer ;
@@ -1436,12 +1436,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit.sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ] ;
@@ -1461,18 +1461,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasDescription ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -1480,15 +1480,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AntimicrobialSusceptibilityLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit.sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -1505,38 +1505,38 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Assay[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assay-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorSpecimen')].id}" ] ;
rr:predicate sphn:hasSample ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataFile')].id}" ] ;
+ rr:predicate sphn:hasDataFile ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{sphn:hasStandardOperatingProcedure.id}" ] ;
rr:predicate sphn:hasStandardOperatingProcedure ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataFile')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
+ rr:predicate sphn:hasSample ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimeSeriesDataFile')].id}" ] ;
rr:predicate sphn:hasDataFile ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assay-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LibraryPreparation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
+ rr:predicate sphn:hasSample ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SampleProcessing')].id}" ] ;
rr:predicate sphn:hasPredecessor ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assay-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LibraryPreparation')].id}" ] ;
+ rr:predicate sphn:hasPredecessor ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase[*].id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SampleProcessing')].id}" ] ;
- rr:predicate sphn:hasPredecessor ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimeSeriesDataFile')].id}" ] ;
- rr:predicate sphn:hasDataFile ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorSpecimen')].id}" ] ;
- rr:predicate sphn:hasSample ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
- rr:predicate sphn:hasSample ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ] ;
rr:subjectMap [ rr:class sphn:Assay ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assay-{id}" ] .
@@ -1547,12 +1547,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assay-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -1569,17 +1569,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Assay[*].sphn:hasStandardOperatingProcedure" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile.id}" ] ;
+ rr:predicate sphn:hasDataFile ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile.id}" ] ;
- rr:predicate sphn:hasDataFile ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasVersion ] ;
rr:subjectMap [ rr:class sphn:StandardOperatingProcedure ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{id}" ] .
@@ -1587,19 +1587,19 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
- rr:predicate sphn:hasPerformer ],
- [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assessment-{sphn:hasAssessment.id}" ] ;
+ rr:predicate sphn:hasAssessment ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assessment-{sphn:hasAssessment.id}" ] ;
- rr:predicate sphn:hasAssessment ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
+ rr:predicate sphn:hasPerformer ] ;
rr:subjectMap [ rr:class sphn:AssessmentEvent ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentEvent-{id}" ] .
@@ -1607,19 +1607,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasResult.id}" ] ;
rr:predicate sphn:hasResult ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assessment-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{sphn:hasComponent[*].id}" ] ;
rr:predicate sphn:hasComponent ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assessment-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].id}" ] ;
- rr:predicate sphn:hasResult ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{sphn:hasRange.id}" ] ;
rr:predicate sphn:hasRange ] ;
rr:subjectMap [ rr:class sphn:Assessment ;
@@ -1638,19 +1634,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasResult[*].id}" ] ;
rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{sphn:hasRange.id}" ] ;
- rr:predicate sphn:hasRange ] ;
+ rr:predicate sphn:hasRange ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:AssessmentComponent ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{id}" ] .
@@ -1667,10 +1659,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasUpperLimit.id}" ] ;
- rr:predicate sphn:hasUpperLimit ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasLowerLimit.id}" ] ;
- rr:predicate sphn:hasLowerLimit ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasLowerLimit.id}" ] ;
+ rr:predicate sphn:hasLowerLimit ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasUpperLimit.id}" ] ;
+ rr:predicate sphn:hasUpperLimit ] ;
rr:subjectMap [ rr:class sphn:Range ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{id}" ] .
@@ -1711,11 +1703,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange.sphn:hasUpperLimit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ] ;
@@ -1741,7 +1733,7 @@
rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')]" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
@@ -1749,31 +1741,31 @@
rr:predicate sphn:hasStringValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ] ;
+ rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:AssessmentResult ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}" ] .
:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasCode_rangesphnCode a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasCode" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sourceConceptID}-sphn-Code-{id}" ] .
:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasCode" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
@@ -1782,119 +1774,7 @@
rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sourceConceptID}-sphn-Code-{termid}" ] .
:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasQuantity" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
- rr:subjectMap [ rr:class sphn:Quantity ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasQuantity.sphn:hasUnit" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
- rr:subjectMap [ rr:class sphn:Unit ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')]" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ] ;
- rr:subjectMap [ rr:class sphn:TumorGradeAssessmentResult ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{id}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasQuantity_rangesphnQuantity a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasQuantity" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
- rr:subjectMap [ rr:class sphn:Quantity ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasQuantity.sphn:hasUnit" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
- rr:subjectMap [ rr:class sphn:Unit ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')]" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
- rr:subjectMap [ rr:class sphn:TumorStageAssessmentResult ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{id}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasQuantity_rangesphnQuantity a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasQuantity" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
@@ -1908,8 +1788,8 @@
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasQuantity.sphn:hasUnit" ;
+:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasQuantity.sphn:hasUnit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
@@ -1917,8 +1797,8 @@
rr:subjectMap [ rr:class sphn:Unit ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}" ] .
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
+:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
@@ -1941,14 +1821,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasRange.sphn:hasLowerLimit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -1974,14 +1854,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasRange.sphn:hasUpperLimit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -2004,23 +1884,23 @@
rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnAssessmentResult a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')]" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasStringValue ] ;
rr:subjectMap [ rr:class sphn:AssessmentResult ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}" ] .
:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnAssessmentResult_sphnhasCode_rangesphnCode a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasCode" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
@@ -2036,7 +1916,7 @@
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sourceConceptID}-sphn-Code-{id}" ] .
:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnAssessmentResult_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasCode" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
@@ -2045,22 +1925,22 @@
rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sourceConceptID}-sphn-Code-{termid}" ] .
:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasQuantity" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult.sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasQuantity.sphn:hasUnit" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult.sphn:hasQuantity.sphn:hasUnit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
@@ -2069,7 +1949,7 @@
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}" ] .
:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult.sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
@@ -2077,193 +1957,81 @@
rr:predicate rdf:type ] ;
rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnTumorGradeAssessmentResult a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')]" ;
+:sphnAssessmentEvent_sphnhasPerformer_rangesphnPerformer a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasPerformer" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ] ;
- rr:subjectMap [ rr:class sphn:TumorGradeAssessmentResult ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{id}" ] .
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ] ;
+ rr:subjectMap [ rr:class sphn:Performer ;
+ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{id}" ] .
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasCode" ;
+:sphnAssessmentEvent_sphnhasPerformer_rangesphnPerformer_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasPerformer.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
rr:termType rr:IRI ] ;
rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sourceConceptID}-sphn-Code-{termid}" ] .
+ rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sourceConceptID}-sphn-Code-{termid}" ] .
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasQuantity_rangesphnQuantity a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasQuantity" ;
+:sphnBilledDiagnosis a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:BilledDiagnosis[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rml:reference "sphn:hasRank.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
- rr:subjectMap [ rr:class sphn:Quantity ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasQuantity.sphn:hasUnit" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasRank ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasRecordDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Age-{sphn:hasSubjectAge.id}" ] ;
+ rr:predicate sphn:hasSubjectAge ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledDiagnosis-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ] ;
- rr:subjectMap [ rr:class sphn:Unit ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}" ] .
+ rr:subjectMap [ rr:class sphn:BilledDiagnosis ;
+ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledDiagnosis-{id}" ] .
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
+:sphnBilledDiagnosis_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:BilledDiagnosis[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
rr:termType rr:IRI ] ;
rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
+ rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledDiagnosis-{sourceConceptID}-sphn-Code-{termid}" ] .
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnTumorStageAssessmentResult a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')]" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ] ;
- rr:subjectMap [ rr:class sphn:TumorStageAssessmentResult ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{id}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasQuantity_rangesphnQuantity a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasQuantity" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
- rr:subjectMap [ rr:class sphn:Quantity ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasQuantity.sphn:hasUnit" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
- rr:subjectMap [ rr:class sphn:Unit ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}" ] .
-
-:sphnAssessmentEvent_sphnhasAssessment_rangesphnAssessment_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasAssessment.sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnAssessmentEvent_sphnhasPerformer_rangesphnPerformer a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasPerformer" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
- rr:subjectMap [ rr:class sphn:Performer ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{id}" ] .
-
-:sphnAssessmentEvent_sphnhasPerformer_rangesphnPerformer_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:AssessmentEvent[*].sphn:hasPerformer.sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnBilledDiagnosis a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:BilledDiagnosis[*]" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasRank.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasRank ],
- [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasRecordDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledDiagnosis-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Age-{sphn:hasSubjectAge.id}" ] ;
- rr:predicate sphn:hasSubjectAge ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ] ;
- rr:subjectMap [ rr:class sphn:BilledDiagnosis ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledDiagnosis-{id}" ] .
-
-:sphnBilledDiagnosis_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:BilledDiagnosis[*].sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledDiagnosis-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnBilledProcedure a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:BilledProcedure[*]" ;
+:sphnBilledProcedure a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:BilledProcedure[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
- rr:predicate sphn:hasBodySite ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasIntent.id}" ] ;
rr:predicate sphn:hasIntent ],
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledProcedure-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasRank.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasRank ] ;
+ rr:predicate sphn:hasRank ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
+ rr:predicate sphn:hasBodySite ] ;
rr:subjectMap [ rr:class sphn:BilledProcedure ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledProcedure-{id}" ] .
@@ -2339,21 +2107,21 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasBiobankName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasBiobankName ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorSpecimen')].id}" ] ;
- rr:predicate sphn:hasSample ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorSpecimen')].id}" ] ;
+ rr:predicate sphn:hasSample ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
rr:predicate sphn:hasSample ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
- rr:predicate sphn:hasSample ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
+ rr:predicate sphn:hasSample ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:Biobanksample ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Biobanksample-{id}" ] .
@@ -2361,24 +2129,24 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Birth[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Country-{sphn:hasCountry.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Birth-{id}-sphn-Code-{sphn:hasDeliveryModeCode.termid}" ] ;
+ rr:predicate sphn:hasDeliveryModeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Country-{sphn:hasCountry.id}" ] ;
rr:predicate sphn:hasCountry ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasGroupSize.id}" ] ;
- rr:predicate sphn:hasGroupSize ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GestationalAgeAtBirth-{sphn:hasGestationalAge.id}" ] ;
+ rr:predicate sphn:hasGestationalAge ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[*].id}" ] ;
rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GestationalAgeAtBirth-{sphn:hasGestationalAge.id}" ] ;
- rr:predicate sphn:hasGestationalAge ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasGroupSize.id}" ] ;
+ rr:predicate sphn:hasGroupSize ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BirthDate-{sphn:hasDate.id}" ] ;
- rr:predicate sphn:hasDate ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Birth-{id}-sphn-Code-{sphn:hasDeliveryModeCode.termid}" ] ;
- rr:predicate sphn:hasDeliveryModeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ] ;
+ rr:predicate sphn:hasDate ] ;
rr:subjectMap [ rr:class sphn:Birth ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Birth-{id}" ] .
@@ -2404,21 +2172,21 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Birth[*].sphn:hasDate" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasYear" ;
- rr:datatype xsd:gYear ] ;
- rr:predicate sphn:hasYear ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasMonth" ;
+ rr:datatype xsd:gMonth ] ;
+ rr:predicate sphn:hasMonth ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rml:reference "sphn:hasMonth" ;
- rr:datatype xsd:gMonth ] ;
- rr:predicate sphn:hasMonth ],
- [ rr:objectMap [ rml:reference "sphn:hasTime" ;
- rr:datatype xsd:time ] ;
- rr:predicate sphn:hasTime ],
+ [ rr:objectMap [ rml:reference "sphn:hasYear" ;
+ rr:datatype xsd:gYear ] ;
+ rr:predicate sphn:hasYear ],
[ rr:objectMap [ rml:reference "sphn:hasDay" ;
rr:datatype xsd:gDay ] ;
- rr:predicate sphn:hasDay ] ;
+ rr:predicate sphn:hasDay ],
+ [ rr:objectMap [ rml:reference "sphn:hasTime" ;
+ rr:datatype xsd:time ] ;
+ rr:predicate sphn:hasTime ] ;
rr:subjectMap [ rr:class sphn:BirthDate ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BirthDate-{id}" ] .
@@ -2470,14 +2238,14 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
- rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ] ;
+ rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
+ rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:MedicalDevice ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}" ] .
@@ -2485,12 +2253,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Birth[*].sphn:hasMedicalDevice[*].sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -2516,12 +2284,12 @@
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ] ;
+ rr:predicate sphn:hasUniformResourceLocator ],
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasDescription ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -2529,15 +2297,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Birth[*].sphn:hasMedicalDevice[*].sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -2554,30 +2322,30 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BloodPressureMeasurement[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
+ rr:predicate sphn:hasPerformer ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
- rr:predicate sphn:hasBodySite ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
- rr:predicate sphn:hasMedicalDevice ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
- rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressure-{sphn:hasResult[*].id}" ] ;
- rr:predicate sphn:hasResult ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
+ rr:predicate sphn:hasBodySite ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressureMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
+ rr:predicate sphn:hasMethodCode ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
- rr:predicate sphn:hasPerformer ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressureMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
- rr:predicate sphn:hasMethodCode ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressure-{sphn:hasResult[*].id}" ] ;
+ rr:predicate sphn:hasResult ] ;
rr:subjectMap [ rr:class sphn:BloodPressureMeasurement ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressureMeasurement-{id}" ] .
@@ -2585,10 +2353,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BloodPressureMeasurement[*].sphn:hasBodySite" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasLaterality.id}" ] ;
- rr:predicate sphn:hasLaterality ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasLaterality.id}" ] ;
+ rr:predicate sphn:hasLaterality ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:BodySite ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}" ] .
@@ -2627,10 +2395,10 @@
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicate sphn:hasProductCode ] ;
rr:subjectMap [ rr:class sphn:Implant ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}" ] .
@@ -2638,12 +2406,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BloodPressureMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ] ;
@@ -2663,19 +2431,19 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BloodPressureMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
- rr:subjectMap [ rr:class sphn:Software ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceLocator ],
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasVersion ] ;
+ rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
:sphnBloodPressureMeasurement_sphnhasMedicalDevice_rangesphnImplant_sphnhasTypeCode_rangesphnTerminology a rr:TriplesMap ;
@@ -2693,12 +2461,12 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ] ;
rr:subjectMap [ rr:class sphn:MedicalDevice ;
@@ -2711,12 +2479,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -2733,15 +2501,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BloodPressureMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
+ rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
+ rr:predicate sphn:hasUniformResourceLocator ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ] ;
@@ -2755,12 +2523,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -2804,17 +2572,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BloodPressureMeasurement[*].sphn:hasResult[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasDiastolicPressure.id}" ] ;
- rr:predicate sphn:hasDiastolicPressure ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasSystolicPressure.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasSystolicPressure.id}" ] ;
rr:predicate sphn:hasSystolicPressure ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile.id}" ] ;
- rr:predicate sphn:hasDataFile ],
[ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasDiastolicPressure.id}" ] ;
+ rr:predicate sphn:hasDiastolicPressure ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasMeanPressure.id}" ] ;
- rr:predicate sphn:hasMeanPressure ] ;
+ rr:predicate sphn:hasMeanPressure ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile.id}" ] ;
+ rr:predicate sphn:hasDataFile ] ;
rr:subjectMap [ rr:class sphn:BloodPressure ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressure-{id}" ] .
@@ -2822,14 +2590,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BloodPressureMeasurement[*].sphn:hasResult[*].sphn:hasDiastolicPressure" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -2855,12 +2623,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BloodPressureMeasurement[*].sphn:hasResult[*].sphn:hasMeanPressure" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
@@ -2888,14 +2656,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BloodPressureMeasurement[*].sphn:hasResult[*].sphn:hasSystolicPressure" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -2921,26 +2689,26 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyHeightMeasurement[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice.id}" ] ;
- rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeightMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
- rr:predicate sphn:hasMethodCode ],
- [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
rr:predicate sphn:hasPerformer ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice.id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeightMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
+ rr:predicate sphn:hasMethodCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Birth-{sphn:hasAssociatedEvent.id}" ] ;
+ rr:predicate sphn:hasAssociatedEvent ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Birth-{sphn:hasAssociatedEvent.id}" ] ;
- rr:predicate sphn:hasAssociatedEvent ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeight-{sphn:hasResult.id}" ] ;
rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
rr:subjectMap [ rr:class sphn:BodyHeightMeasurement ;
@@ -2950,16 +2718,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyHeightMeasurement[*].sphn:hasMedicalDevice" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:MedicalDevice ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}" ] .
@@ -2967,15 +2735,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyHeightMeasurement[*].sphn:hasMedicalDevice.sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -2995,15 +2763,15 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasUniformResourceLocator ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -3066,10 +2834,10 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataDetermination-{sphn:hasDataDetermination.id}" ] ;
- rr:predicate sphn:hasDataDetermination ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ] ;
+ rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataDetermination-{sphn:hasDataDetermination.id}" ] ;
+ rr:predicate sphn:hasDataDetermination ] ;
rr:subjectMap [ rr:class sphn:BodyHeight ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeight-{id}" ] .
@@ -3098,11 +2866,11 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -3128,17 +2896,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyMassIndex[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rml:reference "sphn:hasDeterminationDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDeterminationDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
rr:subjectMap [ rr:class sphn:BodyMassIndex ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyMassIndex-{id}" ] .
@@ -3146,14 +2914,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyMassIndex[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -3179,20 +2947,20 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyPosition[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyPosition-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyPosition-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ] ;
rr:subjectMap [ rr:class sphn:BodyPosition ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyPosition-{id}" ] .
@@ -3209,20 +2977,20 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodySurfaceArea[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rml:reference "sphn:hasCalculationMethod.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasCalculationMethod ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasDeterminationDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDeterminationDateTime ] ;
+ rr:predicate sphn:hasDeterminationDateTime ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCalculationMethod.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasCalculationMethod ] ;
rr:subjectMap [ rr:class sphn:BodySurfaceArea ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySurfaceArea-{id}" ] .
@@ -3230,14 +2998,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodySurfaceArea[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -3263,30 +3031,30 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyTemperatureMeasurement[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
- rr:predicate sphn:hasBodySite ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperature-{sphn:hasResult[*].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
- rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperatureMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperatureMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
rr:predicate sphn:hasMethodCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
- rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
- rr:predicate sphn:hasPerformer ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
+ rr:predicate sphn:hasBodySite ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperature-{sphn:hasResult[*].id}" ] ;
+ rr:predicate sphn:hasResult ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
+ rr:predicate sphn:hasPerformer ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:BodyTemperatureMeasurement ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperatureMeasurement-{id}" ] .
@@ -3332,14 +3100,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyTemperatureMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ] ;
+ rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ] ;
rr:subjectMap [ rr:class sphn:Implant ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}" ] .
@@ -3350,12 +3118,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -3372,18 +3140,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyTemperatureMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceLocator ],
[ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ] ;
+ rr:predicate sphn:hasDescription ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -3400,16 +3168,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyTemperatureMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ] ;
+ rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:MedicalDevice ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}" ] .
@@ -3442,18 +3210,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyTemperatureMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
+ rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceLocator ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -3464,12 +3232,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -3513,13 +3281,13 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyTemperatureMeasurement[*].sphn:hasResult[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile.id}" ] ;
rr:predicate sphn:hasDataFile ],
- [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ] ;
rr:subjectMap [ rr:class sphn:BodyTemperature ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperature-{id}" ] .
@@ -3527,14 +3295,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyTemperatureMeasurement[*].sphn:hasResult[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -3560,28 +3328,28 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyWeightMeasurement[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeightMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
+ rr:predicate sphn:hasPerformer ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeightMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
rr:predicate sphn:hasMethodCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeight-{sphn:hasResult.id}" ] ;
- rr:predicate sphn:hasResult ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasStartDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice.id}" ] ;
rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Birth-{sphn:hasAssociatedEvent.id}" ] ;
rr:predicate sphn:hasAssociatedEvent ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
- rr:predicate sphn:hasPerformer ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeight-{sphn:hasResult.id}" ] ;
+ rr:predicate sphn:hasResult ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ] ;
+ rr:predicate sphn:hasEndDateTime ] ;
rr:subjectMap [ rr:class sphn:BodyWeightMeasurement ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeightMeasurement-{id}" ] .
@@ -3589,16 +3357,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyWeightMeasurement[*].sphn:hasMedicalDevice" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
- rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ] ;
+ rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:MedicalDevice ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}" ] .
@@ -3606,12 +3374,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyWeightMeasurement[*].sphn:hasMedicalDevice.sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ] ;
@@ -3631,18 +3399,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyWeightMeasurement[*].sphn:hasMedicalDevice.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ] ;
+ rr:predicate sphn:hasDescription ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceLocator ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -3650,15 +3418,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyWeightMeasurement[*].sphn:hasMedicalDevice.sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -3705,10 +3473,10 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataDetermination-{sphn:hasDataDetermination.id}" ] ;
- rr:predicate sphn:hasDataDetermination ] ;
+ rr:predicate sphn:hasDataDetermination ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ] ;
rr:subjectMap [ rr:class sphn:BodyWeight ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeight-{id}" ] .
@@ -3734,12 +3502,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:BodyWeightMeasurement[*].sphn:hasResult.sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
@@ -3769,17 +3537,17 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacIndex-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
rr:predicate sphn:hasMethodCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rml:reference "sphn:hasDeterminationDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDeterminationDateTime ] ;
+ rr:predicate sphn:hasDeterminationDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ] ;
rr:subjectMap [ rr:class sphn:CardiacIndex ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacIndex-{id}" ] .
@@ -3796,12 +3564,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:CardiacIndex[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
@@ -3829,28 +3597,28 @@
rml:logicalSource [ rml:iterator "$.content.sphn:CardiacOutputMeasurement[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasEndDateTime ],
+ rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutput-{sphn:hasResult[*].id}" ] ;
rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
- rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasEndDateTime ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutputMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
- rr:predicate sphn:hasMethodCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
rr:predicate sphn:hasPerformer ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutputMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
+ rr:predicate sphn:hasMethodCode ] ;
rr:subjectMap [ rr:class sphn:CardiacOutputMeasurement ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutputMeasurement-{id}" ] .
@@ -3858,14 +3626,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:CardiacOutputMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ] ;
+ rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:Implant ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}" ] .
@@ -3898,18 +3666,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:CardiacOutputMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasDescription ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
[ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -3926,14 +3694,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:CardiacOutputMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:MedicalDevice ;
@@ -3968,18 +3736,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:CardiacOutputMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ] ;
+ rr:predicate sphn:hasDescription ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceLocator ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -4053,11 +3821,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:CardiacOutputMeasurement[*].sphn:hasResult[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ] ;
@@ -4086,30 +3854,30 @@
rml:logicalSource [ rml:iterator "$.content.sphn:CircumferenceMeasurement[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Birth-{sphn:hasAssociatedEvent.id}" ] ;
- rr:predicate sphn:hasAssociatedEvent ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
+ rr:predicate sphn:hasPerformer ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CircumferenceMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
+ rr:predicate sphn:hasMethodCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
- rr:predicate sphn:hasBodySite ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Circumference-{sphn:hasResult.id}" ] ;
rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice.id}" ] ;
- rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
- rr:predicate sphn:hasPerformer ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CircumferenceMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
- rr:predicate sphn:hasMethodCode ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice.id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
+ rr:predicate sphn:hasBodySite ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Birth-{sphn:hasAssociatedEvent.id}" ] ;
+ rr:predicate sphn:hasAssociatedEvent ] ;
rr:subjectMap [ rr:class sphn:CircumferenceMeasurement ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CircumferenceMeasurement-{id}" ] .
@@ -4155,16 +3923,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:CircumferenceMeasurement[*].sphn:hasMedicalDevice" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ] ;
+ rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ] ;
rr:subjectMap [ rr:class sphn:MedicalDevice ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}" ] .
@@ -4172,17 +3940,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:CircumferenceMeasurement[*].sphn:hasMedicalDevice.sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
- rr:subjectMap [ rr:class sphn:Code ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
+ rr:subjectMap [ rr:class sphn:Code ;
+ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
:sphnCircumferenceMeasurement_sphnhasMedicalDevice_rangesphnMedicalDevice_sphnhasProductCode_rangesphnTerminology a rr:TriplesMap ;
rml:logicalSource [ rml:iterator "$.content.sphn:CircumferenceMeasurement[*].sphn:hasMedicalDevice.sphn:hasProductCode" ;
@@ -4197,18 +3965,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:CircumferenceMeasurement[*].sphn:hasMedicalDevice.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasDescription ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceLocator ],
[ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -4219,12 +3987,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -4280,14 +4048,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:CircumferenceMeasurement[*].sphn:hasResult.sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -4318,10 +4086,10 @@
rr:predicate sphn:hasEventDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CivilStatus-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
rr:subjectMap [ rr:class sphn:CivilStatus ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CivilStatus-{id}" ] .
@@ -4338,20 +4106,20 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Consent[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Consent-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Consent-{id}-sphn-Code-{sphn:hasStatusCode.termid}" ] ;
- rr:predicate sphn:hasStatusCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasTemplateIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasTemplateIdentifier ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Consent-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Consent-{id}-sphn-Code-{sphn:hasStatusCode.termid}" ] ;
+ rr:predicate sphn:hasStatusCode ] ;
rr:subjectMap [ rr:class sphn:Consent ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Consent-{id}" ] .
@@ -4377,26 +4145,26 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DataFile[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceIdentifier ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rml:reference "sphn:hasEncoding.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasEncoding ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Hash-{sphn:hasHash.id}" ] ;
+ rr:predicate sphn:hasHash ],
[ rr:objectMap [ rml:reference "sphn:hasCreationDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasCreationDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{id}-sphn-Code-{sphn:hasFormatCode.termid}" ] ;
- rr:predicate sphn:hasFormatCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Hash-{sphn:hasHash.id}" ] ;
- rr:predicate sphn:hasHash ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasEncoding.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasEncoding ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasFormatCode ] ;
rr:subjectMap [ rr:class sphn:DataFile ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{id}" ] .
@@ -4426,39 +4194,39 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DataProcessing[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assay-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Assay')].id}" ] ;
- rr:predicate sphn:hasPredecessor ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAssay-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAssay')].id}" ] ;
- rr:predicate sphn:hasPredecessor ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sphn:hasQualityControlMetric[*].id}" ] ;
- rr:predicate sphn:hasQualityControlMetric ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProcessing-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataProcessing')].id}" ] ;
- rr:predicate sphn:hasPredecessor ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAnalysis-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAnalysis')].id}" ] ;
- rr:predicate sphn:hasPredecessor ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware.id}" ] ;
- rr:predicate sphn:hasSoftware ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase[*].id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataFile')].id}" ] ;
rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimeSeriesDataFile')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sphn:hasQualityControlMetric[*].id}" ] ;
+ rr:predicate sphn:hasQualityControlMetric ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimeSeriesDataFile')].id}" ] ;
rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAssay-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAssay')].id}" ] ;
+ rr:predicate sphn:hasPredecessor ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProcessing-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataFile')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimeSeriesDataFile')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProcessing-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProcessing-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{sphn:hasStandardOperatingProcedure.id}" ] ;
rr:predicate sphn:hasStandardOperatingProcedure ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProcessing-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware.id}" ] ;
+ rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProcessing-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataProcessing')].id}" ] ;
+ rr:predicate sphn:hasPredecessor ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAnalysis-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAnalysis')].id}" ] ;
+ rr:predicate sphn:hasPredecessor ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assay-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Assay')].id}" ] ;
+ rr:predicate sphn:hasPredecessor ],
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
rr:subjectMap [ rr:class sphn:DataProcessing ;
@@ -4468,15 +4236,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DataProcessing[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProcessing-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -4493,11 +4261,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DataProcessing[*].sphn:hasQualityControlMetric[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:QualityControlMetric ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}" ] .
@@ -4509,12 +4277,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -4531,14 +4299,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DataProcessing[*].sphn:hasQualityControlMetric[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -4564,12 +4332,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DataProcessing[*].sphn:hasSoftware" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasDescription ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
@@ -4583,17 +4351,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DataProcessing[*].sphn:hasStandardOperatingProcedure" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
+ rr:predicate sphn:hasDescription ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile.id}" ] ;
rr:predicate sphn:hasDataFile ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasVersion ] ;
rr:subjectMap [ rr:class sphn:StandardOperatingProcedure ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{id}" ] .
@@ -4614,12 +4382,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProvider-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -4627,21 +4395,21 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Death[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DeathDate-{sphn:hasDate.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasReportDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasReportDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DeathDate-{sphn:hasDate.id}" ] ;
rr:predicate sphn:hasDate ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasReportDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasReportDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Death-{id}-sphn-Code-{sphn:hasCircumstanceCode.termid}" ] ;
rr:predicate sphn:hasCircumstanceCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Death-{id}-sphn-Code-{sphn:hasConditionCode.termid}" ] ;
- rr:predicate sphn:hasConditionCode ] ;
+ rr:predicate sphn:hasConditionCode ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ] ;
rr:subjectMap [ rr:class sphn:Death ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Death-{id}" ] .
@@ -4667,18 +4435,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Death[*].sphn:hasDate" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDay" ;
- rr:datatype xsd:gDay ] ;
- rr:predicate sphn:hasDay ],
- [ rr:objectMap [ rml:reference "sphn:hasTime" ;
- rr:datatype xsd:time ] ;
- rr:predicate sphn:hasTime ],
- [ rr:objectMap [ rml:reference "sphn:hasYear" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasYear" ;
rr:datatype xsd:gYear ] ;
rr:predicate sphn:hasYear ],
[ rr:objectMap [ rml:reference "sphn:hasMonth" ;
rr:datatype xsd:gMonth ] ;
- rr:predicate sphn:hasMonth ] ;
+ rr:predicate sphn:hasMonth ],
+ [ rr:objectMap [ rml:reference "sphn:hasTime" ;
+ rr:datatype xsd:time ] ;
+ rr:predicate sphn:hasTime ],
+ [ rr:objectMap [ rml:reference "sphn:hasDay" ;
+ rr:datatype xsd:gDay ] ;
+ rr:predicate sphn:hasDay ] ;
rr:subjectMap [ rr:class sphn:DeathDate ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DeathDate-{id}" ] .
@@ -4686,16 +4454,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Diagnosis[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Diagnosis-{id}-sphn-Code-{sphn:hasCode[*].id}" ] ;
- rr:predicate sphn:hasCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Diagnosis-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Age-{sphn:hasSubjectAge.id}" ] ;
- rr:predicate sphn:hasSubjectAge ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Diagnosis-{id}-sphn-Code-{sphn:hasCode[*].id}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Age-{sphn:hasSubjectAge.id}" ] ;
+ rr:predicate sphn:hasSubjectAge ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
@@ -4708,15 +4476,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Diagnosis[*].sphn:hasCode[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Diagnosis-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -4733,28 +4501,28 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugAdministrationEvent[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasDuration.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugAdministrationEvent-{id}-sphn-Code-{sphn:hasAdministrationRouteCode.termid}" ] ;
+ rr:predicate sphn:hasAdministrationRouteCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasEndDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasDuration.id}" ] ;
rr:predicate sphn:hasDuration ],
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimePattern-{sphn:hasTimePattern.id}" ] ;
rr:predicate sphn:hasTimePattern ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugAdministrationEvent-{id}-sphn-Code-{sphn:hasAdministrationRouteCode.termid}" ] ;
- rr:predicate sphn:hasAdministrationRouteCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugAdministrationEvent-{id}-sphn-Code-{sphn:hasReasonToStopCode.termid}" ] ;
- rr:predicate sphn:hasReasonToStopCode ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Drug-{sphn:hasDrug.id}" ] ;
rr:predicate sphn:hasDrug ],
- [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasEndDateTime ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugAdministrationEvent-{id}-sphn-Code-{sphn:hasReasonToStopCode.termid}" ] ;
+ rr:predicate sphn:hasReasonToStopCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:DrugAdministrationEvent ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugAdministrationEvent-{id}" ] .
@@ -4771,16 +4539,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugAdministrationEvent[*].sphn:hasDrug" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasActiveIngredient[*].id}" ] ;
- rr:predicate sphn:hasActiveIngredient ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasInactiveIngredient[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasInactiveIngredient[*].id}" ] ;
rr:predicate sphn:hasInactiveIngredient ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{sphn:hasArticle.id}" ] ;
rr:predicate sphn:hasArticle ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ] ;
+ rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasActiveIngredient[*].id}" ] ;
+ rr:predicate sphn:hasActiveIngredient ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:Drug ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Drug-{id}" ] .
@@ -4788,17 +4556,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugAdministrationEvent[*].sphn:hasDrug.sphn:hasActiveIngredient[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rml:reference "sphn:hasGenericName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasGenericName ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:Substance ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}" ] .
@@ -4806,15 +4574,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugAdministrationEvent[*].sphn:hasDrug.sphn:hasActiveIngredient[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -4831,14 +4599,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugAdministrationEvent[*].sphn:hasDrug.sphn:hasActiveIngredient[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -4864,15 +4632,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugAdministrationEvent[*].sphn:hasDrug.sphn:hasArticle" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{sphn:hasManufacturedDoseForm.id}" ] ;
- rr:predicate sphn:hasManufacturedDoseForm ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{sphn:hasManufacturedDoseForm.id}" ] ;
+ rr:predicate sphn:hasManufacturedDoseForm ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:DrugArticle ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{id}" ] .
@@ -4880,15 +4648,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugAdministrationEvent[*].sphn:hasDrug.sphn:hasArticle.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -4910,12 +4678,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -4934,15 +4702,15 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rml:reference "sphn:hasGenericName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasGenericName ] ;
+ rr:predicate sphn:hasGenericName ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:Substance ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}" ] .
@@ -4950,15 +4718,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugAdministrationEvent[*].sphn:hasDrug.sphn:hasInactiveIngredient[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -4975,14 +4743,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugAdministrationEvent[*].sphn:hasDrug.sphn:hasInactiveIngredient[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -5008,14 +4776,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugAdministrationEvent[*].sphn:hasDrug.sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -5041,14 +4809,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugAdministrationEvent[*].sphn:hasDuration" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -5101,37 +4869,37 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugPrescription[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NursingDiagnosis-{sphn:hasIndicationToStart[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#NursingDiagnosis')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologyDiagnosis-{sphn:hasIndicationToStart[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OncologyDiagnosis')].id}" ] ;
rr:predicate sphn:hasIndicationToStart ],
- [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasRecordDateTime ],
- [ rr:objectMap [ rml:reference "sphn:hasFirstAdministrationDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasFirstAdministrationDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledDiagnosis-{sphn:hasIndicationToStart[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BilledDiagnosis')].id}" ] ;
rr:predicate sphn:hasIndicationToStart ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugPrescription-{id}-sphn-Code-{sphn:hasAdministrationRouteCode.termid}" ] ;
- rr:predicate sphn:hasAdministrationRouteCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimePattern-{sphn:hasTimePattern.id}" ] ;
- rr:predicate sphn:hasTimePattern ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Drug-{sphn:hasDrug.id}" ] ;
- rr:predicate sphn:hasDrug ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasIntent[*].id}" ] ;
+ rr:predicate sphn:hasIntent ],
[ rr:objectMap [ rml:reference "sphn:hasLastAdministrationDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasLastAdministrationDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Diagnosis-{sphn:hasIndicationToStart[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Diagnosis')].id}" ] ;
rr:predicate sphn:hasIndicationToStart ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasIntent[*].id}" ] ;
- rr:predicate sphn:hasIntent ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologyDiagnosis-{sphn:hasIndicationToStart[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OncologyDiagnosis')].id}" ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasRecordDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimePattern-{sphn:hasTimePattern.id}" ] ;
+ rr:predicate sphn:hasTimePattern ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Drug-{sphn:hasDrug.id}" ] ;
+ rr:predicate sphn:hasDrug ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugPrescription-{id}-sphn-Code-{sphn:hasAdministrationRouteCode.termid}" ] ;
+ rr:predicate sphn:hasAdministrationRouteCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NursingDiagnosis-{sphn:hasIndicationToStart[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#NursingDiagnosis')].id}" ] ;
rr:predicate sphn:hasIndicationToStart ],
+ [ rr:objectMap [ rml:reference "sphn:hasFirstAdministrationDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasFirstAdministrationDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasFrequency.id}" ] ;
rr:predicate sphn:hasFrequency ] ;
rr:subjectMap [ rr:class sphn:DrugPrescription ;
@@ -5150,16 +4918,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugPrescription[*].sphn:hasDrug" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{sphn:hasArticle.id}" ] ;
- rr:predicate sphn:hasArticle ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasActiveIngredient[*].id}" ] ;
rr:predicate sphn:hasActiveIngredient ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{sphn:hasArticle.id}" ] ;
+ rr:predicate sphn:hasArticle ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasInactiveIngredient[*].id}" ] ;
- rr:predicate sphn:hasInactiveIngredient ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ] ;
+ rr:predicate sphn:hasInactiveIngredient ] ;
rr:subjectMap [ rr:class sphn:Drug ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Drug-{id}" ] .
@@ -5167,15 +4935,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugPrescription[*].sphn:hasDrug.sphn:hasActiveIngredient[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rml:reference "sphn:hasGenericName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasGenericName ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Substance ;
@@ -5185,15 +4953,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugPrescription[*].sphn:hasDrug.sphn:hasActiveIngredient[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -5210,14 +4978,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugPrescription[*].sphn:hasDrug.sphn:hasActiveIngredient[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -5243,15 +5011,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugPrescription[*].sphn:hasDrug.sphn:hasArticle" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{sphn:hasManufacturedDoseForm.id}" ] ;
- rr:predicate sphn:hasManufacturedDoseForm ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{sphn:hasManufacturedDoseForm.id}" ] ;
+ rr:predicate sphn:hasManufacturedDoseForm ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:DrugArticle ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{id}" ] .
@@ -5262,12 +5030,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -5286,15 +5054,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugPrescription[*].sphn:hasDrug.sphn:hasArticle.sphn:hasManufacturedDoseForm.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -5311,17 +5079,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugPrescription[*].sphn:hasDrug.sphn:hasInactiveIngredient[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rml:reference "sphn:hasGenericName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasGenericName ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Substance ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}" ] .
@@ -5329,15 +5097,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugPrescription[*].sphn:hasDrug.sphn:hasInactiveIngredient[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -5357,11 +5125,11 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -5387,12 +5155,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugPrescription[*].sphn:hasDrug.sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
@@ -5420,14 +5188,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:DrugPrescription[*].sphn:hasFrequency" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -5489,30 +5257,30 @@
rml:logicalSource [ rml:iterator "$.content.sphn:ElectrocardiographicProcedure[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Electrocardiogram-{sphn:hasOutput.id}" ] ;
- rr:predicate sphn:hasOutput ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasIntent.id}" ] ;
+ rr:predicate sphn:hasIntent ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite[*].id}" ] ;
+ rr:predicate sphn:hasBodySite ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Electrocardiogram-{sphn:hasOutput.id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasNumberOfLeads.id}" ] ;
+ rr:predicate sphn:hasNumberOfLeads ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ElectrocardiographicProcedure-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite[*].id}" ] ;
- rr:predicate sphn:hasBodySite ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasNumberOfLeads.id}" ] ;
- rr:predicate sphn:hasNumberOfLeads ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasIntent.id}" ] ;
- rr:predicate sphn:hasIntent ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PhysiologicState-{sphn:hasSubjectPhysiologicState.id}" ] ;
- rr:predicate sphn:hasSubjectPhysiologicState ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ElectrocardiographicProcedure-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
- rr:predicate sphn:hasCode ] ;
+ rr:predicate sphn:hasSubjectPhysiologicState ] ;
rr:subjectMap [ rr:class sphn:ElectrocardiographicProcedure ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ElectrocardiographicProcedure-{id}" ] .
@@ -5585,11 +5353,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:ElectrocardiographicProcedure[*].sphn:hasNumberOfLeads" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ] ;
@@ -5645,19 +5413,19 @@
rml:logicalSource [ rml:iterator "$.content.sphn:ExcludedDisorder[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasRecordDateTime ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ExcludedDisorder-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
- rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasRecordDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ExcludedDisorder-{id}-sphn-Code-{sphn:hasCode[*].id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ExcludedDisorder-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:ExcludedDisorder ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ExcludedDisorder-{id}" ] .
@@ -5690,31 +5458,31 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Exposure[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasDuration.id}" ] ;
- rr:predicate sphn:hasDuration ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Exposure-{id}-sphn-Code-{sphn:hasAgentCode.termid}" ] ;
+ rr:predicate sphn:hasAgentCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Exposure-{id}-sphn-Code-{sphn:hasDegreeCode.termid}" ] ;
+ rr:predicate sphn:hasDegreeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Exposure-{id}-sphn-Code-{sphn:hasRouteCode[*].termid}" ] ;
rr:predicate sphn:hasRouteCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasRecordDateTime ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Exposure-{id}-sphn-Code-{sphn:hasDegreeCode.termid}" ] ;
- rr:predicate sphn:hasDegreeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Exposure-{id}-sphn-Code-{sphn:hasAgentCode.termid}" ] ;
- rr:predicate sphn:hasAgentCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasRecordDateTime ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasDuration.id}" ] ;
+ rr:predicate sphn:hasDuration ] ;
rr:subjectMap [ rr:class sphn:Exposure ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Exposure-{id}" ] .
@@ -5743,11 +5511,11 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -5773,14 +5541,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Exposure[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -5818,19 +5586,19 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FluidInputOutput-{sphn:hasFluidInputOutput[*].id}" ] ;
- rr:predicate sphn:hasFluidInputOutput ],
+ [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasEndDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FluidInputOutput-{sphn:hasFluidInputOutput[*].id}" ] ;
+ rr:predicate sphn:hasFluidInputOutput ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasEndDateTime ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ] ;
rr:subjectMap [ rr:class sphn:FluidBalance ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FluidBalance-{id}" ] .
@@ -5838,14 +5606,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:FluidBalance[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -5871,20 +5639,20 @@
rml:logicalSource [ rml:iterator "$.content.sphn:FluidInputOutput[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasSubstance.id}" ] ;
- rr:predicate sphn:hasSubstance ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasSubstance.id}" ] ;
+ rr:predicate sphn:hasSubstance ] ;
rr:subjectMap [ rr:class sphn:FluidInputOutput ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FluidInputOutput-{id}" ] .
@@ -5892,15 +5660,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:FluidInputOutput[*].sphn:hasSubstance" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasGenericName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasGenericName ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ] ;
rr:subjectMap [ rr:class sphn:Substance ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}" ] .
@@ -5917,14 +5685,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:FluidInputOutput[*].sphn:hasSubstance.sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -5950,17 +5718,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:FollowUp[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VitalStatus-{sphn:hasResult.id}" ] ;
+ rr:predicate sphn:hasResult ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VitalStatus-{sphn:hasResult.id}" ] ;
- rr:predicate sphn:hasResult ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FollowUp-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasDateTime ] ;
rr:subjectMap [ rr:class sphn:FollowUp ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FollowUp-{id}" ] .
@@ -5977,10 +5745,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:FollowUp[*].sphn:hasResult" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VitalStatus-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Death-{sphn:hasDeath.id}" ] ;
- rr:predicate sphn:hasDeath ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Death-{sphn:hasDeath.id}" ] ;
+ rr:predicate sphn:hasDeath ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VitalStatus-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:VitalStatus ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VitalStatus-{id}" ] .
@@ -5997,14 +5765,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:GestationalAgeAtBirth[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
rr:subjectMap [ rr:class sphn:GestationalAgeAtBirth ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GestationalAgeAtBirth-{id}" ] .
@@ -6015,11 +5783,11 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -6045,29 +5813,29 @@
rml:logicalSource [ rml:iterator "$.content.sphn:HealthcareEncounter[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TherapeuticArea-{sphn:hasTherapeuticArea.id}" ] ;
+ rr:predicate sphn:hasTherapeuticArea ],
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{sphn:hasTargetLocation.id}" ] ;
- rr:predicate sphn:hasTargetLocation ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{sphn:hasOriginLocation.id}" ] ;
rr:predicate sphn:hasOriginLocation ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{sphn:hasCurrentLocation.id}" ] ;
rr:predicate sphn:hasCurrentLocation ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TherapeuticArea-{sphn:hasTherapeuticArea.id}" ] ;
- rr:predicate sphn:hasTherapeuticArea ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{sphn:hasTargetLocation.id}" ] ;
+ rr:predicate sphn:hasTargetLocation ] ;
rr:subjectMap [ rr:class sphn:HealthcareEncounter ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HealthcareEncounter-{id}" ] .
@@ -6075,11 +5843,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:HealthcareEncounter[*].sphn:hasCurrentLocation" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasExact" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasExact" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasExact ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ rr:predicate sphn:hasExact ] ;
rr:subjectMap [ rr:class sphn:Location ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{id}" ] .
@@ -6096,11 +5864,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:HealthcareEncounter[*].sphn:hasOriginLocation" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasExact" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasExact" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasExact ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ rr:predicate sphn:hasExact ] ;
rr:subjectMap [ rr:class sphn:Location ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{id}" ] .
@@ -6117,11 +5885,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:HealthcareEncounter[*].sphn:hasTargetLocation" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasExact" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasExact" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasExact ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ rr:predicate sphn:hasExact ] ;
rr:subjectMap [ rr:class sphn:Location ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{id}" ] .
@@ -6150,34 +5918,34 @@
rml:logicalSource [ rml:iterator "$.content.sphn:HeartRateMeasurement[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
- rr:predicate sphn:hasBodySite ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
- rr:predicate sphn:hasPerformer ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRateMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
- rr:predicate sphn:hasMethodCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{sphn:hasResult[*].id}" ] ;
- rr:predicate sphn:hasResult ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PhysiologicState-{sphn:hasSubjectPhysiologicState.id}" ] ;
+ rr:predicate sphn:hasSubjectPhysiologicState ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{sphn:hasResult[*].id}" ] ;
+ rr:predicate sphn:hasResult ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
+ rr:predicate sphn:hasPerformer ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
- rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PhysiologicState-{sphn:hasSubjectPhysiologicState.id}" ] ;
- rr:predicate sphn:hasSubjectPhysiologicState ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
- rr:subjectMap [ rr:class sphn:HeartRateMeasurement ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRateMeasurement-{id}" ] .
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
+ rr:predicate sphn:hasBodySite ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRateMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
+ rr:predicate sphn:hasMethodCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasEndDateTime ] ;
+ rr:subjectMap [ rr:class sphn:HeartRateMeasurement ;
+ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRateMeasurement-{id}" ] .
:sphnHeartRateMeasurement_sphnhasBodySite_rangesphnBodySite a rr:TriplesMap ;
rml:logicalSource [ rml:iterator "$.content.sphn:HeartRateMeasurement[*].sphn:hasBodySite" ;
@@ -6221,14 +5989,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:HeartRateMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicate sphn:hasProductCode ] ;
rr:subjectMap [ rr:class sphn:Implant ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}" ] .
@@ -6236,12 +6004,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:HeartRateMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -6261,7 +6029,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:HeartRateMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasDescription ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
@@ -6269,10 +6040,7 @@
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ] ;
+ rr:predicate sphn:hasVersion ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -6289,16 +6057,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:HeartRateMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ] ;
rr:subjectMap [ rr:class sphn:MedicalDevice ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}" ] .
@@ -6306,12 +6074,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:HeartRateMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ] ;
@@ -6331,18 +6099,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:HeartRateMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasDescription ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -6353,12 +6121,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -6402,12 +6170,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:HeartRateMeasurement[*].sphn:hasResult[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{id}-sphn-Code-{sphn:hasRegularityCode.termid}" ] ;
- rr:predicate sphn:hasRegularityCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile.id}" ] ;
rr:predicate sphn:hasDataFile ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{id}-sphn-Code-{sphn:hasRegularityCode.termid}" ] ;
+ rr:predicate sphn:hasRegularityCode ],
[ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ] ;
@@ -6418,11 +6186,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:HeartRateMeasurement[*].sphn:hasResult[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ] ;
@@ -6478,20 +6246,20 @@
rml:logicalSource [ rml:iterator "$.content.sphn:HomeAddress[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SwissSocioEconomicPosition-{sphn:hasSwissSocioEconomicPosition[*].id}" ] ;
- rr:predicate sphn:hasSwissSocioEconomicPosition ],
- [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Country-{sphn:hasCountry.id}" ] ;
+ rr:predicate sphn:hasCountry ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Country-{sphn:hasCountry.id}" ] ;
- rr:predicate sphn:hasCountry ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SwissSocioEconomicPosition-{sphn:hasSwissSocioEconomicPosition[*].id}" ] ;
+ rr:predicate sphn:hasSwissSocioEconomicPosition ] ;
rr:subjectMap [ rr:class sphn:HomeAddress ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HomeAddress-{id}" ] .
@@ -6565,24 +6333,24 @@
rml:logicalSource [ rml:iterator "$.content.sphn:ImagingProcedure[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasEndDateTime ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ImagingProcedure-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasIntent.id}" ] ;
rr:predicate sphn:hasIntent ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite[*].id}" ] ;
- rr:predicate sphn:hasBodySite ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ImagingProcedure-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
- rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ] ;
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite[*].id}" ] ;
+ rr:predicate sphn:hasBodySite ],
+ [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasEndDateTime ] ;
rr:subjectMap [ rr:class sphn:ImagingProcedure ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ImagingProcedure-{id}" ] .
@@ -6655,7 +6423,13 @@
rml:logicalSource [ rml:iterator "$.content.sphn:ImplantPresence[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasEndDateTime ],
+ [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasRecordDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
@@ -6664,14 +6438,8 @@
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasRecordDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
rr:predicate sphn:hasBodySite ],
- [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasEndDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice.id}" ] ;
rr:predicate sphn:hasMedicalDevice ] ;
rr:subjectMap [ rr:class sphn:ImplantPresence ;
@@ -6681,10 +6449,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:ImplantPresence[*].sphn:hasBodySite" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasLaterality.id}" ] ;
- rr:predicate sphn:hasLaterality ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasLaterality.id}" ] ;
+ rr:predicate sphn:hasLaterality ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:BodySite ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}" ] .
@@ -6734,15 +6502,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:ImplantPresence[*].sphn:hasMedicalDevice.sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -6759,18 +6527,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:ImplantPresence[*].sphn:hasMedicalDevice.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceLocator ],
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasDescription ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -6787,21 +6555,21 @@
rml:logicalSource [ rml:iterator "$.content.sphn:InsuranceStatus[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCoverageType.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasCoverageType ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ] ;
rr:subjectMap [ rr:class sphn:InsuranceStatus ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-InsuranceStatus-{id}" ] .
@@ -6809,733 +6577,733 @@
rml:logicalSource [ rml:iterator "$.supporting_concepts.sphn:Interpretation[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Performer')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicTransposition-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTransposition')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessment-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessment')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacIndex-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacIndex')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceLabTest-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceLabTest')].id}" ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasOutput[*].valueset_iri" ;
+ rr:termType rr:IRI ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodySite')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceInterpretation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceInterpretation')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenAdministrationEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenAdministrationEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeight-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeight')].id}" ] ;
rr:predicate sphn:hasInput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeightMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyWeightMeasurement')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperature-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyTemperature')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SourceSystem')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicInsertion-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ImagingProcedure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ImagingProcedure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabResult')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DrugArticle')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodySite')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Country-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Country')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SubjectPseudoIdentifier-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SubjectPseudoIdentifier')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Result-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Result')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Protein')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Discharge-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Discharge')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rml:reference "sphn:hasOutput[*].valueset_iri" ;
- rr:termType rr:IRI ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicTranslocation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTranslocation')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingInstrument-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingInstrument')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#StandardOperatingProcedure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Admission-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Admission')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabTest-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabTest')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceSequence')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#QualityControlMetric')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAnalysis-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAnalysis')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledDiagnosis-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BilledDiagnosis')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SubjectPseudoIdentifier-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SubjectPseudoIdentifier')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Admission-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Admission')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevicePresence-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevicePresence')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicInversion-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInversion')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityLabTest-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityLabTest')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantDescriptor-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#VariantDescriptor')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAnalysis-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAnalysis')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySurfaceArea-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodySurfaceArea')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Interpretation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Interpretation')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugPrescription-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DrugPrescription')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledProcedure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BilledProcedure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ElectrocardiographicProcedure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ElectrocardiographicProcedure')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SemanticMapping-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SemanticMapping')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-InsuranceStatus-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#InsuranceStatus')].id}" ] ;
rr:predicate sphn:hasInput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AdministrativeCase')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PhysiologicState-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#PhysiologicState')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FluidBalance-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FluidBalance')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Organism')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceRange-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TherapeuticArea-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TherapeuticArea')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugAdministrationEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DrugAdministrationEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Drug-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assay-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Assay')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DeathDate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DeathDate')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeSex-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AdministrativeSex')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologySurgery-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OncologySurgery')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Organism')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityLabTestEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityLabTestEvent')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CopyNumberVariation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PhysiologicState-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#PhysiologicState')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SemanticMapping-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SemanticMapping')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProcessing-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataProcessing')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Exposure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Exposure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transplant-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Transplant')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTest-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyLabTest')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Software')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledDiagnosis-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BilledDiagnosis')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityLabTestEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityLabTestEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityResult')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenAdministrationEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenAdministrationEvent')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SingleNucleotideVariation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SingleNucleotideVariation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Interpretation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Interpretation')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalProcedure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalProcedure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentEvent')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Death-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Death')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenAdministrationEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenAdministrationEvent')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicInversion-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInversion')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Result-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Result')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Intent')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Diagnosis-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Diagnosis')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingInstrument-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingInstrument')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AllergyEpisode-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AllergyEpisode')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LibraryPreparation')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationLabTest-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationLabTest')].id}" ] ;
rr:predicate sphn:hasInput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ImplantPresence-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ImplantPresence')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Country-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Country')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ProblemCondition-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ProblemCondition')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CivilStatus-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CivilStatus')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SwissSocioEconomicPosition-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SwissSocioEconomicPosition')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataRelease-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataRelease')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HeartRate')].id}" ] ;
rr:predicate sphn:hasInput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#PharmaceuticalDoseForm')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevicePresence-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevicePresence')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDelins-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDelins')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ResuscitationDirective-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ResuscitationDirective')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantNotation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#VariantNotation')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BirthDate-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BirthDate')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SwissSocioEconomicPosition-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SwissSocioEconomicPosition')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutput-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutput')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdverseEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AdverseEvent')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FluidBalance-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FluidBalance')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceInterpretationResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceInterpretationResult')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SingleNucleotideVariation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SingleNucleotideVariation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Transcript')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProcessing-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataProcessing')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BirthDate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BirthDate')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CareHandling-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CareHandling')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VitalStatus-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#VitalStatus')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Consent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Consent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Software')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Measurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Measurement')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimePattern-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimePattern')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HealthcarePrimaryInformationSystem-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HealthcarePrimaryInformationSystem')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Measurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Measurement')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyResult')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AdministrativeCase')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingRun-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingRun')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceValue-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeightMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyWeightMeasurement')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Software')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeight-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeight')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyMassIndex-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyMassIndex')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTest-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyLabTest')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentEvent')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProvider-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataProvider')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TherapeuticArea-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TherapeuticArea')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicVariation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicVariation')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergen-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Allergen')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingRun-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingRun')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProvider-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataProvider')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Circumference-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Circumference')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDelins-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDelins')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GestationalAgeAtBirth-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GestationalAgeAtBirth')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeight-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeight')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Birth-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Birth')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NutritionIntake-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#NutritionIntake')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceLabTestEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceLabTestEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyMassIndex-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyMassIndex')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyPosition-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyPosition')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeSex-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AdministrativeSex')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutputMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutputMeasurement')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceInterpretation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceInterpretation')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentEvent')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Result-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Result')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FractionOfInspiredOxygen-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FractionOfInspiredOxygen')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimeSeriesDataFile')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FluidInputOutput-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FluidInputOutput')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationLabTest-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationLabTest')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentEvent')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdverseEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AdverseEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#StandardOperatingProcedure')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CopyNumberVariation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Chromosome')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAssay-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAssay')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SwissSocioEconomicPosition-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SwissSocioEconomicPosition')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTestEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyLabTestEvent')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataFile')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SemanticMapping-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SemanticMapping')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Biobanksample-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Biobanksample')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalProcedure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalProcedure')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabResult')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transplant-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Transplant')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Hash-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Hash')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Result-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Result')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DrugArticle')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantDescriptor-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#VariantDescriptor')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProcessing-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataProcessing')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationLabTestEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationLabTestEvent')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabResult')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assessment-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Assessment')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BirthDate-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BirthDate')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRateMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HeartRateMeasurement')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataDetermination-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataDetermination')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevicePresence-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevicePresence')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rml:reference "sphn:hasInput[*].valueset_iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CircumferenceMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CircumferenceMeasurement')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Range')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ProblemCondition-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ProblemCondition')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorSpecimen')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdverseEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AdverseEvent')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceInterpretation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceInterpretation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Death-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Death')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Measurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Measurement')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRateMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RespiratoryRateMeasurement')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Nationality-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Nationality')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FluidInputOutput-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FluidInputOutput')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicInsertion-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion')].id}" ] ;
rr:predicate sphn:hasOutput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceLabTest-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceLabTest')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Birth-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Birth')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProcessing-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataProcessing')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeight-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeight')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityLabTest-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityLabTest')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Discharge-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Discharge')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologyDiagnosis-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OncologyDiagnosis')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CircumferenceMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CircumferenceMeasurement')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Protein')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Transcript')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDuplication-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDuplication')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessment-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessment')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenePanel-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenePanel')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Chromosome')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRateMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HeartRateMeasurement')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NursingDiagnosis-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#NursingDiagnosis')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimePattern-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimePattern')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VitalStatus-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#VitalStatus')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTestEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyLabTestEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Age-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Age')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledDiagnosis-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BilledDiagnosis')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAnalysis-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAnalysis')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenePanel-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenePanel')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ProblemCondition-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ProblemCondition')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressureMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressureMeasurement')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceData-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SourceData')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Organism')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Protein')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FluidInputOutput-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FluidInputOutput')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutput-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutput')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeSex-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AdministrativeSex')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataDetermination-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataDetermination')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TransplantPresence-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TransplantPresence')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CareHandling-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CareHandling')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityLabTestEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityLabTestEvent')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TobaccoExposure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TobaccoExposure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevicePresence-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevicePresence')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GeneFusion-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRateMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RespiratoryRateMeasurement')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Death-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Death')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Electrocardiogram-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Electrocardiogram')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperature-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyTemperature')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantNotation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#VariantNotation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HealthcareEncounter-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HealthcareEncounter')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeightMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeightMeasurement')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalProcedure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalProcedure')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Biobanksample-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Biobanksample')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FollowUp-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FollowUp')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ImagingProcedure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ImagingProcedure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assay-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Assay')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTest-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyLabTest')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PhysiologicState-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#PhysiologicState')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugAdministrationEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DrugAdministrationEvent')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingInstrument-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingInstrument')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CareHandling-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CareHandling')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Circumference-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Circumference')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceInterpretationResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceInterpretationResult')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CivilStatus-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CivilStatus')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataRelease-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataRelease')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rml:reference "sphn:hasStandardGuideline" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStandardGuideline ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperatureMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyTemperatureMeasurement')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TransplantPresence-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TransplantPresence')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperatureMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyTemperatureMeasurement')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ExcludedDisorder-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ExcludedDisorder')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Admission-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Admission')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasInput[*].sourceConceptType}-{sphn:hasInput[*].sourceConceptID}-sphn-Code-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Code')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabTest-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabTest')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasInput[*].sourceConceptType}-{sphn:hasInput[*].sourceConceptID}-sphn-Code-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Terminology')].termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturationMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturationMeasurement')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-InsuranceStatus-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#InsuranceStatus')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ResuscitationDirective-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ResuscitationDirective')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeightMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeightMeasurement')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeight-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyWeight')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Quantity')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#PharmaceuticalDoseForm')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRateMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HeartRateMeasurement')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationLabTestEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationLabTestEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#NucleotideSequence')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DrugArticle')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingInstrument-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingInstrument')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Intent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GeneFusion-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SampleProcessing')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingRun-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingRun')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceData-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SourceData')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NutritionIntake-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#NutritionIntake')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Transcript')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HealthcarePrimaryInformationSystem-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HealthcarePrimaryInformationSystem')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Laterality')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRateMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RespiratoryRateMeasurement')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTestEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyLabTestEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GestationalAgeAtBirth-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GestationalAgeAtBirth')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicInsertion-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Range')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RadiotherapyProcedure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RadiotherapyProcedure')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergen-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Allergen')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HeartRate')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessment-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessment')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDeletion-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugPrescription-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DrugPrescription')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Discharge-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Discharge')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressure')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Hash-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Hash')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ImagingProcedure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ImagingProcedure')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NursingDiagnosis-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#NursingDiagnosis')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GeneFusion-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySurfaceArea-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodySurfaceArea')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAssay-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAssay')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergy-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Allergy')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantDescriptor-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#VariantDescriptor')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Interpretation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Interpretation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentEvent')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentComponent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SingleNucleotideVariation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SingleNucleotideVariation')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ProblemCondition-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ProblemCondition')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CivilStatus-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CivilStatus')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologySurgery-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OncologySurgery')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentComponent')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProvider-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataProvider')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentEvent')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Substance')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProvider-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataProvider')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ImplantPresence-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ImplantPresence')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugPrescription-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DrugPrescription')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Laterality')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CircumferenceMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CircumferenceMeasurement')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicVariation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicVariation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Range')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceInterpretationResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceInterpretationResult')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacIndex-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacIndex')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ExcludedDisorder-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ExcludedDisorder')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GestationalAgeAtBirth-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GestationalAgeAtBirth')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TherapeuticArea-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TherapeuticArea')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Chromosome')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OrganSupport-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OrganSupport')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorSpecimen')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SourceSystem')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicInversion-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInversion')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeight-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyWeight')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Substance')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Age-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Age')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FractionOfInspiredOxygen-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FractionOfInspiredOxygen')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TherapeuticArea-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TherapeuticArea')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceSequence')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Circumference-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Circumference')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Diagnosis-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Diagnosis')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenePanel-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenePanel')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergy-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Allergy')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodySite')].id}" ] ;
- rr:predicate sphn:hasInput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergy-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Allergy')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentComponent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Substance')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Drug-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyMassIndex-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyMassIndex')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SubjectPseudoIdentifier-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SubjectPseudoIdentifier')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assessment-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Assessment')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ExcludedDisorder-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ExcludedDisorder')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RadiotherapyProcedure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RadiotherapyProcedure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Birth-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Birth')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityLabTest-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityLabTest')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledProcedure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BilledProcedure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Department-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Department')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataRelease-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataRelease')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ResuscitationDirective-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ResuscitationDirective')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Quantity')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ImagingProcedure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ImagingProcedure')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTest-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyLabTest')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabTestEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabTestEvent')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationLabTestEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationLabTestEvent')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#QualityControlMetric')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Organism')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ExcludedDisorder-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ExcludedDisorder')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Drug-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyPosition-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyPosition')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicTranslocation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTranslocation')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transplant-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Transplant')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SourceSystem')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugPrescription-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DrugPrescription')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceRange-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRateMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RespiratoryRateMeasurement')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceResult')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenAdministrationEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenAdministrationEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AllergyEpisode-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AllergyEpisode')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceData-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SourceData')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutput-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutput')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Exposure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Exposure')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeight-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyWeight')].id}" ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasInput[*].valueset_iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicTransposition-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTransposition')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugAdministrationEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DrugAdministrationEvent')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimePattern-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimePattern')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TobaccoExposure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TobaccoExposure')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDuplication-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDuplication')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicInversion-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInversion')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Age-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Age')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#PharmaceuticalDoseForm')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NutritionIntake-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#NutritionIntake')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LibraryPreparation')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Diagnosis-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Diagnosis')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorSpecimen')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FractionOfInspiredOxygen-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FractionOfInspiredOxygen')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TobaccoExposure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TobaccoExposure')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HealthcareEncounter-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HealthcareEncounter')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CivilStatus-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CivilStatus')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Unit')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HeartRate')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VitalStatus-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#VitalStatus')].id}" ] ;
rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rml:reference "sphn:hasStandardGuideline" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasStandardGuideline ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Circumference-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Circumference')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressureMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressureMeasurement')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HealthcarePrimaryInformationSystem-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HealthcarePrimaryInformationSystem')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityResult')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeightMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeightMeasurement')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LibraryPreparation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataDetermination-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataDetermination')].id}" ] ;
rr:predicate sphn:hasInput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#StandardOperatingProcedure')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AllergyEpisode-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AllergyEpisode')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySurfaceArea-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodySurfaceArea')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HealthcarePrimaryInformationSystem-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HealthcarePrimaryInformationSystem')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeightMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyWeightMeasurement')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Unit')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceValue-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ImplantPresence-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ImplantPresence')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HomeAddress-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HomeAddress')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressureMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressureMeasurement')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataDetermination-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataDetermination')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ElectrocardiographicProcedure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ElectrocardiographicProcedure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BirthDate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BirthDate')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperature-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyTemperature')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SampleProcessing')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assessment-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Assessment')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OrganSupport-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OrganSupport')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Location')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceSequence')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutput-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutput')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HomeAddress-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HomeAddress')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Age-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Age')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Consent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Consent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasInput[*].sourceConceptType}-{sphn:hasInput[*].sourceConceptID}-sphn-Code-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Terminology')].termid}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicTransposition-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTransposition')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyPosition-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyPosition')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CopyNumberVariation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicVariation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicVariation')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceValue-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DeathDate-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DeathDate')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Consent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Consent')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasInput[*].sourceConceptType}-{sphn:hasInput[*].sourceConceptID}-sphn-Code-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Code')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Quantity')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Measurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Measurement')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Country-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Country')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdverseEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AdverseEvent')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Software')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Transcript')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutputMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutputMeasurement')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VitalStatus-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#VitalStatus')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantNotation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#VariantNotation')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimeSeriesDataFile')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologySurgery-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OncologySurgery')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HomeAddress-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HomeAddress')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDelins-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDelins')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentEvent')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-InsuranceStatus-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#InsuranceStatus')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeight-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyWeight')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#NucleotideSequence')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Intent')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutputMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutputMeasurement')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimeSeriesDataFile')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataFile')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SubjectPseudoIdentifier-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SubjectPseudoIdentifier')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacIndex-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacIndex')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SampleProcessing')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceRange-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Hash-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Hash')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HealthcareEncounter-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HealthcareEncounter')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ElectrocardiographicProcedure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ElectrocardiographicProcedure')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasOutput[*].sourceConceptType}-{sphn:hasOutput[*].sourceConceptID}-sphn-Code-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Terminology')].termid}" ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTestEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyLabTestEvent')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NursingDiagnosis-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#NursingDiagnosis')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasOutput[*].sourceConceptType}-{sphn:hasOutput[*].sourceConceptID}-sphn-Code-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Code')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GestationalAgeAtBirth-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GestationalAgeAtBirth')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Protein')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Quantity')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessment-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessment')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutputMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutputMeasurement')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ResuscitationDirective-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ResuscitationDirective')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HeartRate')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceLabTestEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceLabTestEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Laterality')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologyDiagnosis-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OncologyDiagnosis')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OrganSupport-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OrganSupport')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Biobanksample-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Biobanksample')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodySite')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacIndex-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacIndex')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessment-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessment')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Diagnosis-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Diagnosis')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDeletion-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabTestEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabTestEvent')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Department-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Department')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressure')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Interpretation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Interpretation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FluidBalance-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FluidBalance')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceLabTestEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceLabTestEvent')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#QualityControlMetric')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PharmaceuticalDoseForm-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#PharmaceuticalDoseForm')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DeathDate-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DeathDate')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Performer')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Range')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeightMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeightMeasurement')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HomeAddress-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HomeAddress')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyPosition-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyPosition')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAssay-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAssay')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SingleNucleotideVariation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SingleNucleotideVariation')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabTestEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabTestEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceData-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SourceData')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TransplantPresence-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TransplantPresence')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimePattern-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimePattern')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantDescriptor-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#VariantDescriptor')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationLabTestEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationLabTestEvent')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperatureMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyTemperatureMeasurement')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturation')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationLabTest-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationLabTest')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentComponent')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDeletion-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NursingDiagnosis-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#NursingDiagnosis')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDelins-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDelins')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturationMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturationMeasurement')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CircumferenceMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CircumferenceMeasurement')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDeletion-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceRange-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CareHandling-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CareHandling')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessment-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessment')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugAdministrationEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DrugAdministrationEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#NucleotideSequence')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Nationality-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Nationality')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FractionOfInspiredOxygen-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FractionOfInspiredOxygen')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRate-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RespiratoryRate')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Location')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assessment-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Assessment')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDuplication-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDuplication')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SampleProcessing')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FollowUp-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FollowUp')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Performer')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LibraryPreparation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturation')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TransplantPresence-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TransplantPresence')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SourceSystem')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityLabTestEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityLabTestEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FluidBalance-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FluidBalance')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceValue-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FluidInputOutput-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FluidInputOutput')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FollowUp-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FollowUp')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledProcedure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BilledProcedure')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RespiratoryRate')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Performer')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabTestEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabTestEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#QualityControlMetric')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Electrocardiogram-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Electrocardiogram')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Exposure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Exposure')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledProcedure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BilledProcedure')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessment-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessment')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transplant-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Transplant')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Biobanksample-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Biobanksample')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeSex-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AdministrativeSex')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HealthcareEncounter-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HealthcareEncounter')].id}" ] ;
rr:predicate sphn:hasOutput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Allergen-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Allergen')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Hash-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Hash')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicTransposition-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTransposition')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Location')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Department-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Department')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDuplication-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDuplication')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceLabTestEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceLabTestEvent')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologySurgery-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OncologySurgery')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicInsertion-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasOutput[*].sourceConceptType}-{sphn:hasOutput[*].sourceConceptID}-sphn-Code-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Terminology')].termid}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GeneFusion-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Consent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Consent')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceInterpretationResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceInterpretationResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataFile')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Discharge-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Discharge')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Exposure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Exposure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ImplantPresence-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ImplantPresence')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicVariation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicVariation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Electrocardiogram-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Electrocardiogram')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturationMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturationMeasurement')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DeathDate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DeathDate')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessment-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessment')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Laterality')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyMassIndex-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyMassIndex')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-InsuranceStatus-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#InsuranceStatus')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenePanel-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenePanel')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Chromosome')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceLabTest-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceLabTest')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Electrocardiogram-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Electrocardiogram')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicTranslocation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTranslocation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperature-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyTemperature')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAnalysis-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAnalysis')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Birth-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Birth')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DrugArticle-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DrugArticle')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentEvent-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentEvent')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Unit')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationLabTest-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationLabTest')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-PhysiologicState-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#PhysiologicState')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SwissSocioEconomicPosition-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SwissSocioEconomicPosition')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RespiratoryRate')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabTest-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabTest')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BilledDiagnosis-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BilledDiagnosis')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FollowUp-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FollowUp')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Nationality-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Nationality')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TobaccoExposure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TobaccoExposure')].id}" ] ;
- rr:predicate sphn:hasOutput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assay-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Assay')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Intent')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceSequence')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ElectrocardiographicProcedure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ElectrocardiographicProcedure')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturationMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturationMeasurement')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRateMeasurement-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HeartRateMeasurement')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RadiotherapyProcedure-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RadiotherapyProcedure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Department-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Department')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Location-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Location')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SemanticMapping-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SemanticMapping')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Country-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Country')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Admission-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Admission')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#NucleotideSequence')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationResult')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityResult')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentEvent-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentEvent')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceInterpretation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceInterpretation')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicTranslocation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTranslocation')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Drug-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Drug')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySurfaceArea-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodySurfaceArea')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Nationality-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Nationality')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AllergyEpisode-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AllergyEpisode')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologyDiagnosis-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OncologyDiagnosis')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAssay-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAssay')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AdministrativeCase')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationResult')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRate-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RespiratoryRate')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabTest-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabTest')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantNotation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#VariantNotation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyResult')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NutritionIntake-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#NutritionIntake')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Unit')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityLabTest-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityLabTest')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Substance')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalProcedure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalProcedure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologyDiagnosis-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OncologyDiagnosis')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingRun-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingRun')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperatureMeasurement-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyTemperatureMeasurement')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataFile')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataRelease-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataRelease')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CopyNumberVariation-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimeSeriesDataFile')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasOutput[*].sourceConceptType}-{sphn:hasOutput[*].sourceConceptID}-sphn-Code-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Code')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorSpecimen')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RadiotherapyProcedure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RadiotherapyProcedure')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OrganSupport-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OrganSupport')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Death-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Death')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceResult-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceResult')].id}" ] ;
rr:predicate sphn:hasOutput ] ;
rr:subjectMap [ rr:class sphn:Interpretation ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Interpretation-{id}" ] .
@@ -7544,12 +7312,12 @@
rml:logicalSource [ rml:iterator "$.supporting_concepts.sphn:Interpretation[*].sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Code')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ] ;
@@ -7569,12 +7337,12 @@
rml:logicalSource [ rml:iterator "$.supporting_concepts.sphn:Interpretation[*].sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Code')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ] ;
@@ -7594,41 +7362,41 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Isolate[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
+ rr:predicate sphn:hasOrganism ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
- rr:predicate sphn:hasOrganism ],
- [ rr:objectMap [ rml:reference "sphn:hasPrimaryContainer.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasPrimaryContainer ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
- rr:predicate sphn:hasBodySite ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
rr:predicate sphn:hasMedicalDevice ],
[ rr:objectMap [ rml:reference "sphn:hasFixationType.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasFixationType ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')].id}" ] ;
rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
+ rr:predicate sphn:hasBodySite ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{id}-sphn-Code-{sphn:hasMaterialTypeCode[*].termid}" ] ;
+ rr:predicate sphn:hasMaterialTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rml:reference "sphn:hasPrimaryContainer.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasPrimaryContainer ],
[ rr:objectMap [ rml:reference "sphn:hasCollectionDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasCollectionDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].id}" ] ;
rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{id}-sphn-Code-{sphn:hasMaterialTypeCode[*].termid}" ] ;
- rr:predicate sphn:hasMaterialTypeCode ],
[ rr:objectMap [ rml:reference "sphn:hasSharedIdentifier" ;
rr:datatype xsd:anyURI ] ;
- rr:predicate sphn:hasSharedIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')].id}" ] ;
- rr:predicate sphn:hasMedicalDevice ] ;
+ rr:predicate sphn:hasSharedIdentifier ] ;
rr:subjectMap [ rr:class sphn:Isolate ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{id}" ] .
@@ -7636,10 +7404,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Isolate[*].sphn:hasBodySite" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasLaterality.id}" ] ;
- rr:predicate sphn:hasLaterality ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasLaterality.id}" ] ;
+ rr:predicate sphn:hasLaterality ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:BodySite ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}" ] .
@@ -7687,10 +7455,10 @@
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:AccessDevice ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}" ] .
@@ -7698,15 +7466,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Isolate[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -7726,15 +7494,15 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasVersion ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -7769,12 +7537,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -7819,16 +7587,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Isolate[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ rr:predicate sphn:hasProductCode ] ;
rr:subjectMap [ rr:class sphn:LabAnalyzer ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}" ] .
@@ -7861,18 +7629,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Isolate[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ] ;
+ rr:predicate sphn:hasUniformResourceLocator ],
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasVersion ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -7880,15 +7648,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Isolate[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')].sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -7909,12 +7677,12 @@
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
- rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
+ rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:MedicalDevice ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}" ] .
@@ -7922,12 +7690,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Isolate[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -7947,18 +7715,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Isolate[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceLocator ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ] ;
+ rr:predicate sphn:hasDescription ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -7966,15 +7734,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Isolate[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -7991,9 +7759,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Isolate[*].sphn:hasOrganism" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Organism ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}" ] .
@@ -8027,26 +7795,26 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LabTestEvent[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasReportDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasReportDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorSpecimen')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
rr:predicate sphn:hasSample ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ],
+ [ rr:objectMap [ rml:reference "sphn:hasReportDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasReportDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
+ rr:predicate sphn:hasSample ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorSpecimen')].id}" ] ;
+ rr:predicate sphn:hasSample ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabTest-{sphn:hasLabTest[*].id}" ] ;
rr:predicate sphn:hasLabTest ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
- rr:predicate sphn:hasSample ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
- rr:predicate sphn:hasSample ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:LabTestEvent ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabTestEvent-{id}" ] .
@@ -8054,14 +7822,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LabTestEvent[*].sphn:hasLabTest[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabResult-{sphn:hasResult[*].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasTestKit.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasTestKit.id}" ] ;
rr:predicate sphn:hasTestKit ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasInstrument.id}" ] ;
rr:predicate sphn:hasInstrument ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabTest-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabResult-{sphn:hasResult[*].id}" ] ;
+ rr:predicate sphn:hasResult ] ;
rr:subjectMap [ rr:class sphn:LabTest ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabTest-{id}" ] .
@@ -8078,16 +7846,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:LabAnalyzer ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}" ] .
@@ -8095,15 +7863,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument.sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -8120,18 +7888,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceLocator ],
[ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ] ;
+ rr:predicate sphn:hasDescription ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -8139,15 +7907,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument.sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -8164,17 +7932,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceValue-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].id}" ] ;
- rr:predicate sphn:hasNumericalReference ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabResult-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabResult-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
[ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasStringValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceRange-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].id}" ] ;
- rr:predicate sphn:hasNumericalReference ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceRange-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].id}" ] ;
+ rr:predicate sphn:hasNumericalReference ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceValue-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].id}" ] ;
+ rr:predicate sphn:hasNumericalReference ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:LabResult ;
@@ -8220,11 +7988,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].sphn:hasLowerLimit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ] ;
@@ -8295,14 +8063,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -8328,11 +8096,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ] ;
@@ -8363,13 +8131,13 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:LabAnalyzer ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}" ] .
@@ -8378,15 +8146,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit.sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -8403,18 +8171,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicate sphn:hasUniformResourceLocator ],
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasVersion ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -8425,12 +8193,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -8447,49 +8215,49 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
- rr:predicate sphn:hasInput ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{sphn:hasStandardOperatingProcedure.id}" ] ;
+ rr:predicate sphn:hasStandardOperatingProcedure ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sphn:hasQualityControlMetric[*].id}" ] ;
+ rr:predicate sphn:hasQualityControlMetric ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenePanel-{sphn:hasGenePanel.id}" ] ;
+ rr:predicate sphn:hasGenePanel ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LibraryPreparation')].id}" ] ;
+ rr:predicate sphn:hasPredecessor ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{id}-sphn-Code-{sphn:hasTargetEnrichmentKitCode.termid}" ] ;
rr:predicate sphn:hasTargetEnrichmentKitCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{id}-sphn-Code-{sphn:hasTargetEnrichmentKitCode.id}" ] ;
- rr:predicate sphn:hasTargetEnrichmentKitCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase[*].id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LibraryPreparation')].id}" ] ;
- rr:predicate sphn:hasPredecessor ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{id}-sphn-Code-{sphn:hasKitCode.id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{id}-sphn-Code-{sphn:hasKitCode.termid}" ] ;
rr:predicate sphn:hasKitCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenePanel-{sphn:hasGenePanel.id}" ] ;
- rr:predicate sphn:hasGenePanel ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SampleProcessing')].id}" ] ;
rr:predicate sphn:hasPredecessor ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasIntendedInsertSize.id}" ] ;
+ rr:predicate sphn:hasIntendedInsertSize ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorSpecimen')].id}" ] ;
- rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{id}-sphn-Code-{sphn:hasTargetEnrichmentKitCode.id}" ] ;
+ rr:predicate sphn:hasTargetEnrichmentKitCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sphn:hasQualityControlMetric[*].id}" ] ;
- rr:predicate sphn:hasQualityControlMetric ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasIntendedInsertSize.id}" ] ;
- rr:predicate sphn:hasIntendedInsertSize ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{sphn:hasStandardOperatingProcedure.id}" ] ;
- rr:predicate sphn:hasStandardOperatingProcedure ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{id}-sphn-Code-{sphn:hasKitCode.termid}" ] ;
- rr:predicate sphn:hasKitCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{id}-sphn-Code-{sphn:hasKitCode.id}" ] ;
+ rr:predicate sphn:hasKitCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorSpecimen')].id}" ] ;
+ rr:predicate sphn:hasInput ] ;
rr:subjectMap [ rr:class sphn:LibraryPreparation ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{id}" ] .
@@ -8497,15 +8265,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -8522,10 +8290,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasGenePanel" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile[*].id}" ] ;
- rr:predicate sphn:hasDataFile ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{sphn:hasFocusGene[*].id}" ] ;
- rr:predicate sphn:hasFocusGene ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{sphn:hasFocusGene[*].id}" ] ;
+ rr:predicate sphn:hasFocusGene ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile[*].id}" ] ;
+ rr:predicate sphn:hasDataFile ] ;
rr:subjectMap [ rr:class sphn:GenePanel ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenePanel-{id}" ] .
@@ -8533,16 +8301,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasGenePanel.sphn:hasFocusGene[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sphn:hasTranscript[*].id}" ] ;
- rr:predicate sphn:hasTranscript ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasProtein[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasProtein[*].id}" ] ;
rr:predicate sphn:hasProtein ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sphn:hasTranscript[*].id}" ] ;
+ rr:predicate sphn:hasTranscript ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
+ rr:predicate sphn:hasOrganism ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
- rr:predicate sphn:hasOrganism ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Gene ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}" ] .
@@ -8575,9 +8343,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasGenePanel.sphn:hasFocusGene[*].sphn:hasOrganism" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Organism ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}" ] .
@@ -8586,12 +8354,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasGenePanel.sphn:hasFocusGene[*].sphn:hasOrganism.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -8627,12 +8395,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -8685,14 +8453,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasGenePanel.sphn:hasFocusGene[*].sphn:hasTranscript[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasProtein.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasProtein.id}" ] ;
rr:predicate sphn:hasProtein ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
+ rr:predicate sphn:hasOrganism ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
- rr:predicate sphn:hasOrganism ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Transcript ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{id}" ] .
@@ -8700,15 +8468,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasGenePanel.sphn:hasFocusGene[*].sphn:hasTranscript[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -8725,9 +8493,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasGenePanel.sphn:hasFocusGene[*].sphn:hasTranscript[*].sphn:hasOrganism" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Organism ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}" ] .
@@ -8736,15 +8504,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasGenePanel.sphn:hasFocusGene[*].sphn:hasTranscript[*].sphn:hasOrganism.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -8761,12 +8529,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasGenePanel.sphn:hasFocusGene[*].sphn:hasTranscript[*].sphn:hasProtein" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
+ rr:predicate sphn:hasOrganism ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
- rr:predicate sphn:hasOrganism ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Protein ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}" ] .
@@ -8799,9 +8567,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasGenePanel.sphn:hasFocusGene[*].sphn:hasTranscript[*].sphn:hasProtein.sphn:hasOrganism" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Organism ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}" ] .
@@ -8813,12 +8581,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -8835,12 +8603,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasIntendedInsertSize" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
@@ -8868,15 +8636,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasKitCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -8906,12 +8674,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasQualityControlMetric[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ] ;
@@ -8931,12 +8699,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasQualityControlMetric[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
@@ -8964,17 +8732,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:LibraryPreparation[*].sphn:hasStandardOperatingProcedure" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile.id}" ] ;
- rr:predicate sphn:hasDataFile ] ;
+ rr:predicate sphn:hasDataFile ],
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasDescription ] ;
rr:subjectMap [ rr:class sphn:StandardOperatingProcedure ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{id}" ] .
@@ -9007,54 +8775,54 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FractionOfInspiredOxygen-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FractionOfInspiredOxygen')].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
- rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutput-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutput')].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressure-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressure')].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Result-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Result')].id}" ] ;
rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturation-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturation')].id}" ] ;
rr:predicate sphn:hasResult ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeight-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyWeight')].id}" ] ;
rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HeartRate')].id}" ] ;
- rr:predicate sphn:hasResult ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperature-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyTemperature')].id}" ] ;
rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturation-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
+ rr:predicate sphn:hasPerformer ],
+ [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasEndDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FractionOfInspiredOxygen-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FractionOfInspiredOxygen')].id}" ] ;
rr:predicate sphn:hasResult ],
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeight-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeight')].id}" ] ;
rr:predicate sphn:hasResult ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Circumference-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Circumference')].id}" ] ;
rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Measurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
- rr:predicate sphn:hasMethodCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].id}" ] ;
+ rr:predicate sphn:hasResult ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRate-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RespiratoryRate')].id}" ] ;
rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Result-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Result')].id}" ] ;
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HeartRate')].id}" ] ;
rr:predicate sphn:hasResult ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].id}" ] ;
rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
- rr:predicate sphn:hasPerformer ],
- [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasEndDateTime ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutput-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutput')].id}" ] ;
+ rr:predicate sphn:hasResult ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressure-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressure')].id}" ] ;
+ rr:predicate sphn:hasResult ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Measurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
+ rr:predicate sphn:hasMethodCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].id}" ] ;
+ rr:predicate sphn:hasResult ] ;
rr:subjectMap [ rr:class sphn:Measurement ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Measurement-{id}" ] .
@@ -9062,13 +8830,13 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ] ;
rr:subjectMap [ rr:class sphn:Implant ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}" ] .
@@ -9080,12 +8848,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -9102,18 +8870,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
+ rr:predicate sphn:hasDescription ],
[ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:predicate sphn:hasUniformResourceLocator ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -9130,14 +8898,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:MedicalDevice ;
@@ -9147,12 +8915,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -9172,12 +8940,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
@@ -9191,15 +8959,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -9245,13 +9013,13 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ] ;
+ rr:predicate sphn:hasStringValue ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:AssessmentResult ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}" ] .
@@ -9259,12 +9027,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ] ;
@@ -9284,14 +9052,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -9317,15 +9085,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressure')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasSystolicPressure.id}" ] ;
- rr:predicate sphn:hasSystolicPressure ],
- [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile.id}" ] ;
rr:predicate sphn:hasDataFile ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasMeanPressure.id}" ] ;
rr:predicate sphn:hasMeanPressure ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasSystolicPressure.id}" ] ;
+ rr:predicate sphn:hasSystolicPressure ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasDiastolicPressure.id}" ] ;
rr:predicate sphn:hasDiastolicPressure ] ;
rr:subjectMap [ rr:class sphn:BloodPressure ;
@@ -9368,14 +9136,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressure')].sphn:hasMeanPressure" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -9401,11 +9169,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressure')].sphn:hasSystolicPressure" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ] ;
@@ -9436,11 +9204,11 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataDetermination-{sphn:hasDataDetermination.id}" ] ;
+ rr:predicate sphn:hasDataDetermination ],
[ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataDetermination-{sphn:hasDataDetermination.id}" ] ;
- rr:predicate sphn:hasDataDetermination ] ;
+ rr:predicate sphn:hasDateTime ] ;
rr:subjectMap [ rr:class sphn:BodyHeight ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeight-{id}" ] .
@@ -9466,11 +9234,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeight')].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ] ;
@@ -9515,12 +9283,12 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -9580,12 +9348,12 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -9627,12 +9395,12 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -9715,14 +9483,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FractionOfInspiredOxygen')].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -9748,15 +9516,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HeartRate')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{id}-sphn-Code-{sphn:hasRegularityCode.termid}" ] ;
+ rr:predicate sphn:hasRegularityCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile.id}" ] ;
rr:predicate sphn:hasDataFile ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{id}-sphn-Code-{sphn:hasRegularityCode.termid}" ] ;
- rr:predicate sphn:hasRegularityCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ] ;
rr:subjectMap [ rr:class sphn:HeartRate ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{id}" ] .
@@ -9764,14 +9532,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HeartRate')].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -9806,13 +9574,13 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturation')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile.id}" ] ;
rr:predicate sphn:hasDataFile ],
- [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ] ;
rr:subjectMap [ rr:class sphn:OxygenSaturation ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturation-{id}" ] .
@@ -9820,11 +9588,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturation')].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ] ;
@@ -9853,15 +9621,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RespiratoryRate')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataDetermination-{sphn:hasDataDetermination.id}" ] ;
+ rr:predicate sphn:hasDataDetermination ],
+ [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile.id}" ] ;
- rr:predicate sphn:hasDataFile ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataDetermination-{sphn:hasDataDetermination.id}" ] ;
- rr:predicate sphn:hasDataDetermination ] ;
+ rr:predicate sphn:hasDataFile ] ;
rr:subjectMap [ rr:class sphn:RespiratoryRate ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRate-{id}" ] .
@@ -9890,11 +9658,11 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -9927,13 +9695,13 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasStringValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:TumorGradeAssessmentResult ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{id}" ] .
@@ -9950,12 +9718,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Measurement[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
@@ -10039,26 +9807,26 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MedicalProcedure[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalProcedure-{id}-sphn-Code-{sphn:hasCode[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalProcedure-{id}-sphn-Code-{sphn:hasCode[*].id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasEndDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite[*].id}" ] ;
rr:predicate sphn:hasBodySite ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalProcedure-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
+ rr:predicate sphn:hasEndDateTime ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasIntent.id}" ] ;
rr:predicate sphn:hasIntent ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalProcedure-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ] ;
rr:subjectMap [ rr:class sphn:MedicalProcedure ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalProcedure-{id}" ] .
@@ -10066,10 +9834,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MedicalProcedure[*].sphn:hasBodySite[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasLaterality.id}" ] ;
- rr:predicate sphn:hasLaterality ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasLaterality.id}" ] ;
+ rr:predicate sphn:hasLaterality ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:BodySite ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}" ] .
@@ -10104,15 +9872,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MedicalProcedure[*].sphn:hasCode[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalProcedure-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -10149,14 +9917,14 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasSample.id}" ] ;
- rr:predicate sphn:hasSample ],
[ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ],
[ rr:objectMap [ rml:reference "sphn:hasReportDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasReportDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasSample.id}" ] ;
+ rr:predicate sphn:hasSample ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
@@ -10170,18 +9938,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].id}" ] ;
- rr:predicate sphn:hasTargetMolecule ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceLabTest-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasTestKit.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasTestKit.id}" ] ;
rr:predicate sphn:hasTestKit ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasInstrument.id}" ] ;
- rr:predicate sphn:hasInstrument ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].id}" ] ;
+ rr:predicate sphn:hasTargetMolecule ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceResult-{sphn:hasResult[*].id}" ] ;
rr:predicate sphn:hasResult ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasInstrument.id}" ] ;
+ rr:predicate sphn:hasInstrument ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Protein')].id}" ] ;
- rr:predicate sphn:hasTargetMolecule ] ;
+ rr:predicate sphn:hasTargetMolecule ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceLabTest-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:MicrobiologyBiomoleculePresenceLabTest ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceLabTest-{id}" ] .
@@ -10200,13 +9968,13 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:LabAnalyzer ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}" ] .
@@ -10215,12 +9983,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument.sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ] ;
@@ -10240,18 +10008,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasDescription ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasVersion ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -10259,12 +10027,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument.sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -10284,13 +10052,13 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasStringValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceValue-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].id}" ] ;
rr:predicate sphn:hasNumericalReference ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceRange-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].id}" ] ;
@@ -10322,14 +10090,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].sphn:hasLowerLimit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -10357,12 +10125,12 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -10397,14 +10165,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -10430,14 +10198,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -10463,16 +10231,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sphn:hasTranscript[*].id}" ] ;
- rr:predicate sphn:hasTranscript ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sphn:hasTranscript[*].id}" ] ;
+ rr:predicate sphn:hasTranscript ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
rr:predicate sphn:hasOrganism ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasProtein[*].id}" ] ;
- rr:predicate sphn:hasProtein ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ] ;
+ rr:predicate sphn:hasProtein ] ;
rr:subjectMap [ rr:class sphn:Gene ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}" ] .
@@ -10480,15 +10248,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -10554,15 +10322,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].sphn:hasProtein[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -10590,12 +10358,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].sphn:hasProtein[*].sphn:hasOrganism.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -10619,10 +10387,10 @@
rr:predicate sphn:hasOrganism ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasProtein.id}" ] ;
- rr:predicate sphn:hasProtein ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasProtein.id}" ] ;
+ rr:predicate sphn:hasProtein ] ;
rr:subjectMap [ rr:class sphn:Transcript ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{id}" ] .
@@ -10630,15 +10398,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].sphn:hasTranscript[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -10655,9 +10423,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].sphn:hasTranscript[*].sphn:hasOrganism" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Organism ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}" ] .
@@ -10691,10 +10459,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].sphn:hasTranscript[*].sphn:hasProtein" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
rr:predicate sphn:hasOrganism ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Protein ;
@@ -10704,15 +10472,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].sphn:hasTranscript[*].sphn:hasProtein.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -10729,9 +10497,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].sphn:hasTranscript[*].sphn:hasProtein.sphn:hasOrganism" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Organism ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}" ] .
@@ -10740,15 +10508,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Gene')].sphn:hasTranscript[*].sphn:hasProtein.sphn:hasOrganism.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -10765,12 +10533,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Protein')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
- rr:predicate sphn:hasOrganism ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
+ rr:predicate sphn:hasOrganism ] ;
rr:subjectMap [ rr:class sphn:Protein ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}" ] .
@@ -10778,12 +10546,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Protein')].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ] ;
@@ -10814,15 +10582,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTargetMolecule[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Protein')].sphn:hasOrganism.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -10839,16 +10607,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
- rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
+ rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:LabAnalyzer ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}" ] .
@@ -10856,15 +10624,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit.sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -10881,18 +10649,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -10900,15 +10668,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyBiomoleculePresenceLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit.sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -10925,24 +10693,24 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyMicroscopyLabTestEvent[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTest-{sphn:hasLabTest[*].id}" ] ;
+ rr:predicate sphn:hasLabTest ],
[ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
rr:predicate sphn:hasSample ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasReportDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasReportDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
- rr:predicate sphn:hasSample ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTest-{sphn:hasLabTest[*].id}" ] ;
- rr:predicate sphn:hasLabTest ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
+ rr:predicate sphn:hasSample ] ;
rr:subjectMap [ rr:class sphn:MicrobiologyMicroscopyLabTestEvent ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTestEvent-{id}" ] .
@@ -10950,16 +10718,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyMicroscopyLabTestEvent[*].sphn:hasLabTest[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTest-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyResult-{sphn:hasResult[*].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTest-{id}-sphn-Code-{sphn:hasStainingMethodCode.termid}" ] ;
- rr:predicate sphn:hasStainingMethodCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasTestKit.id}" ] ;
+ rr:predicate sphn:hasTestKit ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasInstrument.id}" ] ;
rr:predicate sphn:hasInstrument ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasTestKit.id}" ] ;
- rr:predicate sphn:hasTestKit ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTest-{id}-sphn-Code-{sphn:hasStainingMethodCode.termid}" ] ;
+ rr:predicate sphn:hasStainingMethodCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTest-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyResult-{sphn:hasResult[*].id}" ] ;
+ rr:predicate sphn:hasResult ] ;
rr:subjectMap [ rr:class sphn:MicrobiologyMicroscopyLabTest ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyLabTest-{id}" ] .
@@ -10976,16 +10744,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyMicroscopyLabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
- rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ] ;
+ rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:LabAnalyzer ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}" ] .
@@ -10993,15 +10761,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyMicroscopyLabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument.sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -11018,18 +10786,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyMicroscopyLabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasDescription ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -11037,15 +10805,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyMicroscopyLabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument.sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -11062,25 +10830,25 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyMicroscopyLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyResult-{id}-sphn-Code-{sphn:hasCellCountEstimateCode.termid}" ] ;
- rr:predicate sphn:hasCellCountEstimateCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyResult-{id}-sphn-Code-{sphn:hasStainingResultCode.termid}" ] ;
- rr:predicate sphn:hasStainingResultCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceRange-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].id}" ] ;
+ rr:predicate sphn:hasNumericalReference ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceValue-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].id}" ] ;
rr:predicate sphn:hasNumericalReference ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rml:reference "sphn:hasCellOrganization.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasCellOrganization ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceRange-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].id}" ] ;
- rr:predicate sphn:hasNumericalReference ],
- [ rr:objectMap [ rml:reference "sphn:hasCellMorphology.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasCellMorphology ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ] ;
+ rr:predicate sphn:hasStringValue ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyResult-{id}-sphn-Code-{sphn:hasStainingResultCode.termid}" ] ;
+ rr:predicate sphn:hasStainingResultCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyResult-{id}-sphn-Code-{sphn:hasCellCountEstimateCode.termid}" ] ;
+ rr:predicate sphn:hasCellCountEstimateCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasCellMorphology.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasCellMorphology ] ;
rr:subjectMap [ rr:class sphn:MicrobiologyMicroscopyResult ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyResult-{id}" ] .
@@ -11097,10 +10865,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyMicroscopyLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasUpperLimit.id}" ] ;
- rr:predicate sphn:hasUpperLimit ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasLowerLimit.id}" ] ;
- rr:predicate sphn:hasLowerLimit ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasLowerLimit.id}" ] ;
+ rr:predicate sphn:hasLowerLimit ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasUpperLimit.id}" ] ;
+ rr:predicate sphn:hasUpperLimit ] ;
rr:subjectMap [ rr:class sphn:ReferenceRange ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceRange-{id}" ] .
@@ -11141,14 +10909,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyMicroscopyLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].sphn:hasUpperLimit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -11216,14 +10984,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyMicroscopyLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -11267,16 +11035,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyMicroscopyLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ] ;
rr:subjectMap [ rr:class sphn:LabAnalyzer ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}" ] .
@@ -11287,12 +11055,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -11312,15 +11080,15 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
+ rr:predicate sphn:hasUniformResourceLocator ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ] ;
+ rr:predicate sphn:hasVersion ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -11328,15 +11096,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicrobiologyMicroscopyLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit.sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -11353,24 +11121,24 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasReportDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasReportDateTime ],
[ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationLabTest-{sphn:hasLabTest[*].id}" ] ;
rr:predicate sphn:hasLabTest ],
- [ rr:objectMap [ rml:reference "sphn:hasReportDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasReportDateTime ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
rr:predicate sphn:hasSample ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasSample[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
- rr:predicate sphn:hasSample ] ;
+ rr:predicate sphn:hasSample ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ] ;
rr:subjectMap [ rr:class sphn:MicroorganismIdentificationLabTestEvent ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationLabTestEvent-{id}" ] .
@@ -11378,14 +11146,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasTestKit.id}" ] ;
- rr:predicate sphn:hasTestKit ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationLabTest-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationLabTest-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasInstrument.id}" ] ;
rr:predicate sphn:hasInstrument ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationResult-{sphn:hasResult[*].id}" ] ;
- rr:predicate sphn:hasResult ] ;
+ rr:predicate sphn:hasResult ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasTestKit.id}" ] ;
+ rr:predicate sphn:hasTestKit ] ;
rr:subjectMap [ rr:class sphn:MicroorganismIdentificationLabTest ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationLabTest-{id}" ] .
@@ -11402,16 +11170,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ] ;
rr:subjectMap [ rr:class sphn:LabAnalyzer ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}" ] .
@@ -11419,15 +11187,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument.sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -11444,18 +11212,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ] ;
+ rr:predicate sphn:hasDescription ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceLocator ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -11463,15 +11231,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasInstrument.sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -11488,30 +11256,32 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationResult-{id}-sphn-Code-{sphn:hasPresenceCode.termid}" ] ;
- rr:predicate sphn:hasPresenceCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasTimeToPositivity.id}" ] ;
- rr:predicate sphn:hasTimeToPositivity ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceValue-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].id}" ] ;
- rr:predicate sphn:hasNumericalReference ],
- [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasStringValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceRange-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].id}" ] ;
- rr:predicate sphn:hasNumericalReference ] ;
+ rr:predicate sphn:hasNumericalReference ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
+ rr:predicate sphn:hasOrganism ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceValue-{sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].id}" ] ;
+ rr:predicate sphn:hasNumericalReference ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationResult-{id}-sphn-Code-{sphn:hasPresenceCode.termid}" ] ;
+ rr:predicate sphn:hasPresenceCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasTimeToPositivity.id}" ] ;
+ rr:predicate sphn:hasTimeToPositivity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ] ;
rr:subjectMap [ rr:class sphn:MicroorganismIdentificationResult ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationResult-{id}" ] .
:sphnMicroorganismIdentificationLabTestEvent_sphnhasLabTest_rangesphnMicroorganismIdentificationLabTest_sphnhasResult_rangesphnMicroorganismIdentificationResult_sphnhasNumericalReference_rangesphnReferenceRange a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')]" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasUpperLimit.id}" ] ;
- rr:predicate sphn:hasUpperLimit ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasLowerLimit.id}" ] ;
- rr:predicate sphn:hasLowerLimit ] ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')]" ;
+ rml:referenceFormulation ql:JSONPath ;
+ rml:source "patient_data_input.json" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasLowerLimit.id}" ] ;
+ rr:predicate sphn:hasLowerLimit ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasUpperLimit.id}" ] ;
+ rr:predicate sphn:hasUpperLimit ] ;
rr:subjectMap [ rr:class sphn:ReferenceRange ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceRange-{id}" ] .
@@ -11552,14 +11322,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange')].sphn:hasUpperLimit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -11594,14 +11364,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasNumericalReference[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue')].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -11623,6 +11393,42 @@
rr:predicate rdf:type ] ;
rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
+:sphnMicroorganismIdentificationLabTestEvent_sphnhasLabTest_rangesphnMicroorganismIdentificationLabTest_sphnhasResult_rangesphnMicroorganismIdentificationResult_sphnhasOrganism_rangesphnOrganism a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasOrganism" ;
+ rml:referenceFormulation ql:JSONPath ;
+ rml:source "patient_data_input.json" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ] ;
+ rr:subjectMap [ rr:class sphn:Organism ;
+ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}" ] .
+
+:sphnMicroorganismIdentificationLabTestEvent_sphnhasLabTest_rangesphnMicroorganismIdentificationLabTest_sphnhasResult_rangesphnMicroorganismIdentificationResult_sphnhasOrganism_rangesphnOrganism_sphnhasCode_rangesphnCode a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasOrganism.sphn:hasCode" ;
+ rml:referenceFormulation ql:JSONPath ;
+ rml:source "patient_data_input.json" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
+ rr:subjectMap [ rr:class sphn:Code ;
+ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sourceConceptID}-sphn-Code-{id}" ] .
+
+:sphnMicroorganismIdentificationLabTestEvent_sphnhasLabTest_rangesphnMicroorganismIdentificationLabTest_sphnhasResult_rangesphnMicroorganismIdentificationResult_sphnhasOrganism_rangesphnOrganism_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasOrganism.sphn:hasCode" ;
+ rml:referenceFormulation ql:JSONPath ;
+ rml:source "patient_data_input.json" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate rdf:type ] ;
+ rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sourceConceptID}-sphn-Code-{termid}" ] .
+
:sphnMicroorganismIdentificationLabTestEvent_sphnhasLabTest_rangesphnMicroorganismIdentificationLabTest_sphnhasResult_rangesphnMicroorganismIdentificationResult_sphnhasPresenceCode_rangesphnTerminology a rr:TriplesMap ;
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasPresenceCode" ;
rml:referenceFormulation ql:JSONPath ;
@@ -11638,12 +11444,12 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -11669,12 +11475,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasResult[*].sphn:hasTimeToPositivity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
@@ -11702,16 +11508,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
+ rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
- rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ] ;
rr:subjectMap [ rr:class sphn:LabAnalyzer ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}" ] .
@@ -11719,15 +11525,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit.sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -11744,18 +11550,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ] ;
+ rr:predicate sphn:hasDescription ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -11763,15 +11569,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:MicroorganismIdentificationLabTestEvent[*].sphn:hasLabTest[*].sphn:hasTestKit.sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -11794,11 +11600,11 @@
rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Nationality-{id}-sphn-Code-{sphn:hasAcquistionCode.termid}" ] ;
+ rr:predicate sphn:hasAcquistionCode ],
[ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasRecordDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Nationality-{id}-sphn-Code-{sphn:hasAcquistionCode.termid}" ] ;
- rr:predicate sphn:hasAcquistionCode ] ;
+ rr:predicate sphn:hasRecordDateTime ] ;
rr:subjectMap [ rr:class sphn:Nationality ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Nationality-{id}" ] .
@@ -11833,19 +11639,19 @@
rml:logicalSource [ rml:iterator "$.content.sphn:NursingDiagnosis[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasRecordDateTime ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Age-{sphn:hasSubjectAge.id}" ] ;
- rr:predicate sphn:hasSubjectAge ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NursingDiagnosis-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Age-{sphn:hasSubjectAge.id}" ] ;
+ rr:predicate sphn:hasSubjectAge ] ;
rr:subjectMap [ rr:class sphn:NursingDiagnosis ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NursingDiagnosis-{id}" ] .
@@ -11853,12 +11659,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:NursingDiagnosis[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ] ;
@@ -11869,24 +11675,24 @@
rml:logicalSource [ rml:iterator "$.content.sphn:NutritionIntake[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasEnergyQuantity.id}" ] ;
- rr:predicate sphn:hasEnergyQuantity ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NutritionIntake-{id}-sphn-Code-{sphn:hasModeCode.termid}" ] ;
- rr:predicate sphn:hasModeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasSubstance[*].id}" ] ;
+ rr:predicate sphn:hasSubstance ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasEnergyQuantity.id}" ] ;
+ rr:predicate sphn:hasEnergyQuantity ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sphn:hasSubstance[*].id}" ] ;
- rr:predicate sphn:hasSubstance ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NutritionIntake-{id}-sphn-Code-{sphn:hasModeCode.termid}" ] ;
+ rr:predicate sphn:hasModeCode ] ;
rr:subjectMap [ rr:class sphn:NutritionIntake ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NutritionIntake-{id}" ] .
@@ -11897,11 +11703,11 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -11936,17 +11742,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:NutritionIntake[*].sphn:hasSubstance[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
[ rr:objectMap [ rml:reference "sphn:hasGenericName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasGenericName ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Substance ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{id}" ] .
@@ -11957,12 +11763,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Substance-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -12012,26 +11818,26 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OncologyDiagnosis[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasRecordDateTime ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologyDiagnosis-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Age-{sphn:hasSubjectAge.id}" ] ;
- rr:predicate sphn:hasSubjectAge ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologyDiagnosis-{id}-sphn-Code-{sphn:hasCode[*].id}" ] ;
- rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasRecordDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
rr:predicate sphn:hasBodySite ],
[ rr:objectMap [ rml:reference "sphn:hasIncidenceDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasIncidenceDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologyDiagnosis-{id}-sphn-Code-{sphn:hasCode[*].id}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Age-{sphn:hasSubjectAge.id}" ] ;
+ rr:predicate sphn:hasSubjectAge ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologyDiagnosis-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
- rr:predicate sphn:hasCode ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:OncologyDiagnosis ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologyDiagnosis-{id}" ] .
@@ -12102,25 +11908,25 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OncologySurgery[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasIntent.id}" ] ;
- rr:predicate sphn:hasIntent ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite[*].id}" ] ;
rr:predicate sphn:hasBodySite ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologySurgery-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologySurgery-{id}-sphn-Code-{sphn:hasCode[*].id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologySurgery-{id}-sphn-Code-{sphn:hasCode[*].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasIntent.id}" ] ;
+ rr:predicate sphn:hasIntent ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologySurgery-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:OncologySurgery ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologySurgery-{id}" ] .
@@ -12129,10 +11935,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OncologySurgery[*].sphn:hasBodySite[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasLaterality.id}" ] ;
- rr:predicate sphn:hasLaterality ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasLaterality.id}" ] ;
+ rr:predicate sphn:hasLaterality ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:BodySite ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}" ] .
@@ -12170,12 +11976,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OncologySurgery-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -12210,24 +12016,24 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OrganSupport[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OrganSupport-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite[*].id}" ] ;
+ rr:predicate sphn:hasBodySite ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasStartDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasIntent.id}" ] ;
- rr:predicate sphn:hasIntent ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite[*].id}" ] ;
- rr:predicate sphn:hasBodySite ],
+ rr:predicate sphn:hasIntent ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OrganSupport-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:OrganSupport ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OrganSupport-{id}" ] .
@@ -12300,24 +12106,24 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenAdministrationEvent[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasFlowRate.id}" ] ;
- rr:predicate sphn:hasFlowRate ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice.id}" ] ;
- rr:predicate sphn:hasMedicalDevice ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FractionOfInspiredOxygen-{sphn:hasFractionOfInspiredOxygen.id}" ] ;
rr:predicate sphn:hasFractionOfInspiredOxygen ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice.id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasFlowRate.id}" ] ;
+ rr:predicate sphn:hasFlowRate ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
rr:subjectMap [ rr:class sphn:OxygenAdministrationEvent ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenAdministrationEvent-{id}" ] .
@@ -12328,11 +12134,11 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -12358,11 +12164,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenAdministrationEvent[*].sphn:hasFractionOfInspiredOxygen" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ] ;
+ rr:predicate sphn:hasDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ] ;
rr:subjectMap [ rr:class sphn:FractionOfInspiredOxygen ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FractionOfInspiredOxygen-{id}" ] .
@@ -12370,14 +12176,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenAdministrationEvent[*].sphn:hasFractionOfInspiredOxygen.sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -12403,14 +12209,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenAdministrationEvent[*].sphn:hasMedicalDevice" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ] ;
rr:subjectMap [ rr:class sphn:MedicalDevice ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}" ] .
@@ -12443,12 +12249,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenAdministrationEvent[*].sphn:hasMedicalDevice.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceLocator ],
[ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
@@ -12471,30 +12277,30 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenSaturationMeasurement[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
- rr:predicate sphn:hasMedicalDevice ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
+ rr:predicate sphn:hasPerformer ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturation-{sphn:hasResult[*].id}" ] ;
+ rr:predicate sphn:hasResult ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
- rr:predicate sphn:hasBodySite ],
- [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasEndDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturationMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
rr:predicate sphn:hasMethodCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturation-{sphn:hasResult[*].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
- rr:predicate sphn:hasPerformer ] ;
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasEndDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
+ rr:predicate sphn:hasBodySite ] ;
rr:subjectMap [ rr:class sphn:OxygenSaturationMeasurement ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturationMeasurement-{id}" ] .
@@ -12502,10 +12308,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenSaturationMeasurement[*].sphn:hasBodySite" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasLaterality.id}" ] ;
- rr:predicate sphn:hasLaterality ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasLaterality.id}" ] ;
+ rr:predicate sphn:hasLaterality ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:BodySite ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}" ] .
@@ -12540,14 +12346,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenSaturationMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ] ;
rr:subjectMap [ rr:class sphn:Implant ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}" ] .
@@ -12558,12 +12364,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -12580,18 +12386,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenSaturationMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ] ;
+ rr:predicate sphn:hasUniformResourceLocator ],
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasDescription ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -12608,16 +12414,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenSaturationMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ] ;
rr:subjectMap [ rr:class sphn:MedicalDevice ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}" ] .
@@ -12625,15 +12431,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenSaturationMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -12650,18 +12456,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenSaturationMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ] ;
+ rr:predicate sphn:hasVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasDescription ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -12669,15 +12475,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenSaturationMeasurement[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -12721,13 +12527,13 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenSaturationMeasurement[*].sphn:hasResult[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile.id}" ] ;
+ rr:predicate sphn:hasDataFile ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile.id}" ] ;
- rr:predicate sphn:hasDataFile ] ;
+ rr:predicate sphn:hasDateTime ] ;
rr:subjectMap [ rr:class sphn:OxygenSaturation ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturation-{id}" ] .
@@ -12735,14 +12541,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:OxygenSaturationMeasurement[*].sphn:hasResult[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -12768,27 +12574,27 @@
rml:logicalSource [ rml:iterator "$.content.sphn:ProblemCondition[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasRecordDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ProblemCondition-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasStringValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ProblemCondition-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ProblemCondition-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rml:reference "sphn:hasOnsetDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasOnsetDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ProblemCondition-{id}-sphn-Code-{sphn:hasRelativeTemporalityCode.termid}" ] ;
+ rr:predicate sphn:hasRelativeTemporalityCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ProblemCondition-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ProblemCondition-{id}-sphn-Code-{sphn:hasRelativeTemporalityCode.termid}" ] ;
- rr:predicate sphn:hasRelativeTemporalityCode ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasOnsetDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasOnsetDateTime ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
rr:subjectMap [ rr:class sphn:ProblemCondition ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ProblemCondition-{id}" ] .
@@ -12796,15 +12602,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:ProblemCondition[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ProblemCondition-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -12830,28 +12636,28 @@
rml:logicalSource [ rml:iterator "$.content.sphn:RadiotherapyProcedure[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite[*].id}" ] ;
- rr:predicate sphn:hasBodySite ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RadiotherapyProcedure-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RadiotherapyProcedure-{id}-sphn-Code-{sphn:hasCode[*].termid}" ] ;
rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasFractionsNumber.id}" ] ;
+ rr:predicate sphn:hasFractionsNumber ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasIntent.id}" ] ;
+ rr:predicate sphn:hasIntent ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasRadiationQuantity.id}" ] ;
rr:predicate sphn:hasRadiationQuantity ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasFractionsNumber.id}" ] ;
- rr:predicate sphn:hasFractionsNumber ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Intent-{sphn:hasIntent.id}" ] ;
- rr:predicate sphn:hasIntent ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite[*].id}" ] ;
+ rr:predicate sphn:hasBodySite ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasEndDateTime ] ;
rr:subjectMap [ rr:class sphn:RadiotherapyProcedure ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RadiotherapyProcedure-{id}" ] .
@@ -12906,14 +12712,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:RadiotherapyProcedure[*].sphn:hasFractionsNumber" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -12959,12 +12765,12 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -12990,55 +12796,55 @@
rml:logicalSource [ rml:iterator "$.supporting_concepts.sphn:ReferenceInterpretation[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceInterpretationResult-{sphn:hasOutput.id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RespiratoryRate')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Circumference-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Circumference')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HeartRate')].id}" ] ;
rr:predicate sphn:hasInput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyHeight-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeight')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceInterpretationResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceInterpretationResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FractionOfInspiredOxygen-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FractionOfInspiredOxygen')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressure')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HeartRate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#HeartRate')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyBiomoleculePresenceResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceResult')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceInterpretationResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceInterpretationResult')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeight-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyWeight')].id}" ] ;
rr:predicate sphn:hasInput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicrobiologyMicroscopyResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyResult')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-FractionOfInspiredOxygen-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#FractionOfInspiredOxygen')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabResult')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Result-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Result')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-OxygenSaturation-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturation')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Circumference-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Circumference')].id}" ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasStandardGuideline" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasStandardGuideline ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AntimicrobialSusceptibilityResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityResult')].id}" ] ;
rr:predicate sphn:hasInput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceInterpretationResult-{sphn:hasOutput.id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BloodPressure-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressure')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceInterpretationResult-{sphn:hasOutput.id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#RespiratoryRate')].id}" ] ;
rr:predicate sphn:hasInput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyTemperature-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyTemperature')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutput-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutput')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Result-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Result')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CardiacOutput-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutput')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rml:reference "sphn:hasStandardGuideline" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStandardGuideline ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodyWeight-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#BodyWeight')].id}" ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MicroorganismIdentificationResult-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationResult')].id}" ] ;
rr:predicate sphn:hasInput ] ;
rr:subjectMap [ rr:class sphn:ReferenceInterpretation ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceInterpretation-{id}" ] .
@@ -13065,26 +12871,26 @@
rml:logicalSource [ rml:iterator "$.content.sphn:RespiratoryRateMeasurement[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRate-{sphn:hasResult[*].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRateMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
- rr:predicate sphn:hasMethodCode ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice.id}" ] ;
- rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
- rr:predicate sphn:hasPerformer ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRateMeasurement-{id}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
+ rr:predicate sphn:hasMethodCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
+ rr:predicate sphn:hasPerformer ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice.id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRate-{sphn:hasResult[*].id}" ] ;
+ rr:predicate sphn:hasResult ] ;
rr:subjectMap [ rr:class sphn:RespiratoryRateMeasurement ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-RespiratoryRateMeasurement-{id}" ] .
@@ -13094,10 +12900,10 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
@@ -13109,15 +12915,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:RespiratoryRateMeasurement[*].sphn:hasMedicalDevice.sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -13134,18 +12940,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:RespiratoryRateMeasurement[*].sphn:hasMedicalDevice.sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasDescription ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -13153,15 +12959,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:RespiratoryRateMeasurement[*].sphn:hasMedicalDevice.sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -13205,13 +13011,13 @@
rml:logicalSource [ rml:iterator "$.content.sphn:RespiratoryRateMeasurement[*].sphn:hasResult[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataDetermination-{sphn:hasDataDetermination.id}" ] ;
+ rr:predicate sphn:hasDataDetermination ],
+ [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataDetermination-{sphn:hasDataDetermination.id}" ] ;
- rr:predicate sphn:hasDataDetermination ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasDataFile.id}" ] ;
rr:predicate sphn:hasDataFile ] ;
rr:subjectMap [ rr:class sphn:RespiratoryRate ;
@@ -13242,11 +13048,11 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -13272,17 +13078,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:ResuscitationDirective[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ResuscitationDirective-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ResuscitationDirective-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasRecordDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
rr:subjectMap [ rr:class sphn:ResuscitationDirective ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ResuscitationDirective-{id}" ] .
@@ -13299,39 +13105,39 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Sample[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCollectionDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasCollectionDateTime ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
- rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rml:reference "sphn:hasCollectionDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasCollectionDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{id}-sphn-Code-{sphn:hasMaterialTypeCode[*].termid}" ] ;
- rr:predicate sphn:hasMaterialTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
- rr:predicate sphn:hasBodySite ],
- [ rr:objectMap [ rml:reference "sphn:hasFixationType.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasFixationType ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
rr:predicate sphn:hasMedicalDevice ],
[ rr:objectMap [ rml:reference "sphn:hasPrimaryContainer.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasPrimaryContainer ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rml:reference "sphn:hasFixationType.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasFixationType ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')].id}" ] ;
rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
[ rr:objectMap [ rml:reference "sphn:hasSharedIdentifier" ;
rr:datatype xsd:anyURI ] ;
rr:predicate sphn:hasSharedIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
- rr:predicate sphn:hasMedicalDevice ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{id}-sphn-Code-{sphn:hasMaterialTypeCode[*].termid}" ] ;
+ rr:predicate sphn:hasMaterialTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
+ rr:predicate sphn:hasBodySite ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Sample ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{id}" ] .
@@ -13339,37 +13145,37 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SampleProcessing[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{sphn:hasStandardOperatingProcedure.id}" ] ;
- rr:predicate sphn:hasStandardOperatingProcedure ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorSpecimen')].id}" ] ;
rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{sphn:hasStandardOperatingProcedure.id}" ] ;
+ rr:predicate sphn:hasStandardOperatingProcedure ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LibraryPreparation')].id}" ] ;
- rr:predicate sphn:hasPredecessor ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase[*].id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sphn:hasQualityControlMetric[*].id}" ] ;
+ rr:predicate sphn:hasQualityControlMetric ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
+ rr:predicate sphn:hasInput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SampleProcessing')].id}" ] ;
rr:predicate sphn:hasPredecessor ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
- rr:predicate sphn:hasOutput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LibraryPreparation')].id}" ] ;
+ rr:predicate sphn:hasPredecessor ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Sample')].id}" ] ;
rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase[*].id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sphn:hasQualityControlMetric[*].id}" ] ;
- rr:predicate sphn:hasQualityControlMetric ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Isolate-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Isolate')].id}" ] ;
- rr:predicate sphn:hasInput ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ] ;
rr:subjectMap [ rr:class sphn:SampleProcessing ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{id}" ] .
@@ -13377,15 +13183,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SampleProcessing[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -13402,11 +13208,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SampleProcessing[*].sphn:hasQualityControlMetric[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:QualityControlMetric ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}" ] .
@@ -13418,12 +13224,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -13473,17 +13279,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SampleProcessing[*].sphn:hasStandardOperatingProcedure" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasDescription ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile.id}" ] ;
rr:predicate sphn:hasDataFile ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ] ;
+ rr:predicate sphn:hasVersion ] ;
rr:subjectMap [ rr:class sphn:StandardOperatingProcedure ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{id}" ] .
@@ -13538,12 +13344,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Sample[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ] ;
rr:subjectMap [ rr:class sphn:AccessDevice ;
@@ -13553,12 +13359,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Sample[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -13578,18 +13384,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Sample[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:predicate sphn:hasDescription ],
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
+ rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ] ;
+ rr:predicate sphn:hasUniformResourceLocator ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -13606,14 +13412,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Sample[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:Implant ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}" ] .
@@ -13646,18 +13452,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Sample[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ] ;
+ rr:predicate sphn:hasUniformResourceLocator ],
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasDescription ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -13674,16 +13480,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Sample[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
+ rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
- rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ] ;
rr:subjectMap [ rr:class sphn:LabAnalyzer ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}" ] .
@@ -13716,18 +13522,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Sample[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
+ rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ] ;
+ rr:predicate sphn:hasDescription ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceLocator ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -13735,15 +13541,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Sample[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')].sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -13762,14 +13568,14 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ] ;
+ rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ] ;
rr:subjectMap [ rr:class sphn:MedicalDevice ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}" ] .
@@ -13777,12 +13583,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Sample[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ] ;
@@ -13802,18 +13608,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:Sample[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasUniformResourceLocator ],
[ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ] ;
+ rr:predicate sphn:hasDescription ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -13846,26 +13652,26 @@
rml:logicalSource [ rml:iterator "$.supporting_concepts.sphn:SemanticMapping[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasOutputCode.sourceConceptType}-{sphn:hasOutputCode.sourceConceptID}-sphn-Code-{sphn:hasOutputCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceData-{sphn:hasSourceData[*].id}" ] ;
+ rr:predicate sphn:hasSourceData ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasOutputCode.sourceConceptType}-{sphn:hasOutputCode.sourceConceptID}-sphn-Code-{sphn:hasOutputCode.termid}" ] ;
rr:predicate sphn:hasOutputCode ],
- [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasOutputCode.sourceConceptType}-{sphn:hasOutputCode.sourceConceptID}-sphn-Code-{sphn:hasOutputCode.id}" ] ;
+ rr:predicate sphn:hasOutputCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceData-{sphn:hasSourceData[*].id}" ] ;
rr:predicate sphn:hasSourceData ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasPurpose.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasPurpose ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceData-{sphn:hasSourceData[*].id}" ] ;
- rr:predicate sphn:hasSourceData ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasOutputCode.sourceConceptType}-{sphn:hasOutputCode.sourceConceptID}-sphn-Code-{sphn:hasOutputCode.termid}" ] ;
- rr:predicate sphn:hasOutputCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasMethodCode.sourceConceptType}-{sphn:hasMethodCode.sourceConceptID}-sphn-Code-{sphn:hasMethodCode.termid}" ] ;
rr:predicate sphn:hasMethodCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasDateTime ] ;
rr:subjectMap [ rr:class sphn:SemanticMapping ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SemanticMapping-{id}" ] .
@@ -13882,15 +13688,15 @@
rml:logicalSource [ rml:iterator "$.supporting_concepts.sphn:SemanticMapping[*].sphn:hasOutputCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sourceConceptType}-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -13907,43 +13713,43 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SequencingAnalysis[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAnalysis-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAssay-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAssay')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProcessing-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataProcessing')].id}" ] ;
rr:predicate sphn:hasPredecessor ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
- rr:predicate sphn:hasReferenceSequence ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimeSeriesDataFile')].id}" ] ;
- rr:predicate sphn:hasOutput ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimeSeriesDataFile')].id}" ] ;
- rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProcessing-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataProcessing')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimeSeriesDataFile')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataFile')].id}" ] ;
+ rr:predicate sphn:hasOutput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAssay-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAssay')].id}" ] ;
rr:predicate sphn:hasPredecessor ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataFile')].id}" ] ;
rr:predicate sphn:hasInput ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAnalysis-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware.id}" ] ;
rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sphn:hasQualityControlMetric[*].id}" ] ;
+ rr:predicate sphn:hasQualityControlMetric ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase[*].id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAnalysis-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
+ rr:predicate sphn:hasReferenceSequence ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{sphn:hasInput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TimeSeriesDataFile')].id}" ] ;
+ rr:predicate sphn:hasInput ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assay-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Assay')].id}" ] ;
+ rr:predicate sphn:hasPredecessor ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{sphn:hasStandardOperatingProcedure.id}" ] ;
rr:predicate sphn:hasStandardOperatingProcedure ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAnalysis-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAnalysis-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAnalysis')].id}" ] ;
rr:predicate sphn:hasPredecessor ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sphn:hasQualityControlMetric[*].id}" ] ;
- rr:predicate sphn:hasQualityControlMetric ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Assay-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Assay')].id}" ] ;
- rr:predicate sphn:hasPredecessor ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasOutput[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#DataFile')].id}" ] ;
- rr:predicate sphn:hasOutput ] ;
+ rr:predicate sphn:hasStartDateTime ] ;
rr:subjectMap [ rr:class sphn:SequencingAnalysis ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAnalysis-{id}" ] .
@@ -13976,12 +13782,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SequencingAnalysis[*].sphn:hasQualityControlMetric[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ] ;
+ rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:QualityControlMetric ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}" ] .
@@ -13992,12 +13798,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -14058,15 +13864,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SequencingAnalysis[*].sphn:hasReferenceSequence.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -14083,18 +13889,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SequencingAnalysis[*].sphn:hasSoftware" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ] ;
+ rr:predicate sphn:hasVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasDescription ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -14102,11 +13908,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SequencingAnalysis[*].sphn:hasStandardOperatingProcedure" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile.id}" ] ;
- rr:predicate sphn:hasDataFile ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile.id}" ] ;
+ rr:predicate sphn:hasDataFile ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
@@ -14120,42 +13926,42 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SequencingAssay[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SampleProcessing')].id}" ] ;
- rr:predicate sphn:hasPredecessor ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile[*].id}" ] ;
- rr:predicate sphn:hasDataFile ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasSample[*].id}" ] ;
- rr:predicate sphn:hasSample ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAssay-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{sphn:hasStandardOperatingProcedure.id}" ] ;
- rr:predicate sphn:hasStandardOperatingProcedure ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingInstrument-{sphn:hasSequencingInstrument.id}" ] ;
- rr:predicate sphn:hasSequencingInstrument ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAssay-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Sample-{sphn:hasSample[*].id}" ] ;
+ rr:predicate sphn:hasSample ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase[*].id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingRun-{sphn:hasSequencingRun[*].id}" ] ;
- rr:predicate sphn:hasSequencingRun ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sphn:hasLibraryPreparation.id}" ] ;
- rr:predicate sphn:hasLibraryPreparation ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile[*].id}" ] ;
+ rr:predicate sphn:hasDataFile ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasIntendedReadDepth.id}" ] ;
rr:predicate sphn:hasIntendedReadDepth ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingInstrument-{sphn:hasSequencingInstrument.id}" ] ;
+ rr:predicate sphn:hasSequencingInstrument ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasIntendedReadLength.id}" ] ;
+ rr:predicate sphn:hasIntendedReadLength ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LibraryPreparation')].id}" ] ;
rr:predicate sphn:hasPredecessor ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingRun-{sphn:hasSequencingRun[*].id}" ] ;
+ rr:predicate sphn:hasSequencingRun ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-StandardOperatingProcedure-{sphn:hasStandardOperatingProcedure.id}" ] ;
+ rr:predicate sphn:hasStandardOperatingProcedure ],
[ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasIntendedReadLength.id}" ] ;
- rr:predicate sphn:hasIntendedReadLength ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAssay-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SampleProcessing-{sphn:hasPredecessor[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SampleProcessing')].id}" ] ;
+ rr:predicate sphn:hasPredecessor ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LibraryPreparation-{sphn:hasLibraryPreparation.id}" ] ;
+ rr:predicate sphn:hasLibraryPreparation ] ;
rr:subjectMap [ rr:class sphn:SequencingAssay ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingAssay-{id}" ] .
@@ -14191,11 +13997,11 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -14223,12 +14029,12 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -14268,12 +14074,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingInstrument-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -14290,24 +14096,24 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SequencingAssay[*].sphn:hasSequencingRun[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasAverageInsertSize.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasAverageInsertSize.id}" ] ;
rr:predicate sphn:hasAverageInsertSize ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasReadCount.id}" ] ;
- rr:predicate sphn:hasReadCount ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasAverageReadLength.id}" ] ;
rr:predicate sphn:hasAverageReadLength ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile[*].id}" ] ;
rr:predicate sphn:hasDataFile ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sphn:hasQualityControlMetric[*].id}" ] ;
+ rr:predicate sphn:hasQualityControlMetric ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasReadCount.id}" ] ;
+ rr:predicate sphn:hasReadCount ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasMeanReadDepth.id}" ] ;
rr:predicate sphn:hasMeanReadDepth ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{sphn:hasQualityControlMetric[*].id}" ] ;
- rr:predicate sphn:hasQualityControlMetric ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:SequencingRun ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SequencingRun-{id}" ] .
@@ -14315,12 +14121,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SequencingAssay[*].sphn:hasSequencingRun[*].sphn:hasAverageInsertSize" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
@@ -14351,11 +14157,11 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -14381,11 +14187,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SequencingAssay[*].sphn:hasSequencingRun[*].sphn:hasMeanReadDepth" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ] ;
@@ -14414,12 +14220,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SequencingAssay[*].sphn:hasSequencingRun[*].sphn:hasQualityControlMetric[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicate sphn:hasQuantity ] ;
rr:subjectMap [ rr:class sphn:QualityControlMetric ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-QualityControlMetric-{id}" ] .
@@ -14427,12 +14233,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SequencingAssay[*].sphn:hasSequencingRun[*].sphn:hasQualityControlMetric[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -14452,14 +14258,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SequencingAssay[*].sphn:hasSequencingRun[*].sphn:hasQualityControlMetric[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -14485,12 +14291,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SequencingAssay[*].sphn:hasSequencingRun[*].sphn:hasReadCount" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
@@ -14518,14 +14324,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SequencingAssay[*].sphn:hasStandardOperatingProcedure" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile.id}" ] ;
- rr:predicate sphn:hasDataFile ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataFile-{sphn:hasDataFile.id}" ] ;
+ rr:predicate sphn:hasDataFile ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ] ;
@@ -14536,17 +14342,17 @@
rml:logicalSource [ rml:iterator "$.supporting_concepts.sphn:SourceData[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasCode.sourceConceptType}-{sphn:hasCode.sourceConceptID}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasCode.sourceConceptType}-{sphn:hasCode.sourceConceptID}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sphn:hasCode.sourceConceptType}-{sphn:hasCode.sourceConceptID}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
[ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ] ;
+ rr:predicate sphn:hasStringValue ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:SourceData ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceData-{id}" ] .
@@ -14554,15 +14360,15 @@
rml:logicalSource [ rml:iterator "$.supporting_concepts.sphn:SourceData[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-{sourceConceptType}-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -14579,14 +14385,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:SourceSystem[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCategory.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasCategory ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HealthcarePrimaryInformationSystem-{sphn:hasPrimarySystem.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-HealthcarePrimaryInformationSystem-{sphn:hasPrimarySystem.id}" ] ;
rr:predicate sphn:hasPrimarySystem ],
[ rr:objectMap [ rml:reference "sphn:hasPurpose.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasPurpose ],
+ [ rr:objectMap [ rml:reference "sphn:hasCategory.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasCategory ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ] ;
@@ -14618,28 +14424,28 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TimeSeriesDataFile[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Hash-{sphn:hasHash.id}" ] ;
- rr:predicate sphn:hasHash ],
- [ rr:objectMap [ rml:reference "sphn:hasCreationDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasCreationDateTime ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rml:reference "sphn:hasEncoding.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasEncoding ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasEntryCount.id}" ] ;
rr:predicate sphn:hasEntryCount ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rml:reference "sphn:hasEncoding.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasEncoding ],
+ [ rr:objectMap [ rml:reference "sphn:hasCreationDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasCreationDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{id}-sphn-Code-{sphn:hasFormatCode.termid}" ] ;
rr:predicate sphn:hasFormatCode ],
- [ rr:objectMap [ rml:reference "sphn:hasUniformResourceIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceIdentifier ] ;
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Hash-{sphn:hasHash.id}" ] ;
+ rr:predicate sphn:hasHash ] ;
rr:subjectMap [ rr:class sphn:TimeSeriesDataFile ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TimeSeriesDataFile-{id}" ] .
@@ -14650,11 +14456,11 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -14689,12 +14495,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TimeSeriesDataFile[*].sphn:hasHash" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasAlgorithm.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasAlgorithm ],
- [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ] ;
+ rr:predicate sphn:hasStringValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasAlgorithm.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasAlgorithm ] ;
rr:subjectMap [ rr:class sphn:Hash ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Hash-{id}" ] .
@@ -14702,33 +14508,33 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TobaccoExposure[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TobaccoExposure-{id}-sphn-Code-{sphn:hasAgentCode.termid}" ] ;
- rr:predicate sphn:hasAgentCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TobaccoExposure-{id}-sphn-Code-{sphn:hasRouteCode[*].termid}" ] ;
- rr:predicate sphn:hasRouteCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TobaccoExposure-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasDuration.id}" ] ;
+ rr:predicate sphn:hasDuration ],
[ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasRecordDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TobaccoExposure-{id}-sphn-Code-{sphn:hasDegreeCode.termid}" ] ;
- rr:predicate sphn:hasDegreeCode ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasDuration.id}" ] ;
- rr:predicate sphn:hasDuration ],
[ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasEndDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TobaccoExposure-{id}-sphn-Code-{sphn:hasDegreeCode.termid}" ] ;
+ rr:predicate sphn:hasDegreeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasStartDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TobaccoExposure-{id}-sphn-Code-{sphn:hasAgentCode.termid}" ] ;
+ rr:predicate sphn:hasAgentCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TobaccoExposure-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TobaccoExposure-{id}-sphn-Code-{sphn:hasRouteCode[*].termid}" ] ;
+ rr:predicate sphn:hasRouteCode ] ;
rr:subjectMap [ rr:class sphn:TobaccoExposure ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TobaccoExposure-{id}" ] .
@@ -14789,12 +14595,12 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -14838,25 +14644,25 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TransplantPresence[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasEndDateTime ],
- [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasStartDateTime ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transplant-{sphn:hasTransplant.id}" ] ;
+ rr:predicate sphn:hasTransplant ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transplant-{sphn:hasTransplant.id}" ] ;
- rr:predicate sphn:hasTransplant ],
- [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
+ [ rr:objectMap [ rml:reference "sphn:hasStartDateTime" ;
rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasRecordDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
+ rr:predicate sphn:hasStartDateTime ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
rr:predicate sphn:hasBodySite ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rml:reference "sphn:hasRecordDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasRecordDateTime ],
+ [ rr:objectMap [ rml:reference "sphn:hasEndDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasEndDateTime ] ;
rr:subjectMap [ rr:class sphn:TransplantPresence ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TransplantPresence-{id}" ] .
@@ -14864,10 +14670,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TransplantPresence[*].sphn:hasBodySite" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasLaterality.id}" ] ;
- rr:predicate sphn:hasLaterality ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Laterality-{sphn:hasLaterality.id}" ] ;
+ rr:predicate sphn:hasLaterality ] ;
rr:subjectMap [ rr:class sphn:BodySite ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{id}" ] .
@@ -14931,19 +14737,19 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessment-{sphn:hasAssessment.id}" ] ;
+ rr:predicate sphn:hasAssessment ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
rr:predicate sphn:hasPerformer ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessment-{sphn:hasAssessment.id}" ] ;
- rr:predicate sphn:hasAssessment ],
+ [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasDateTime ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ] ;
+ rr:predicate sphn:hasSourceSystem ] ;
rr:subjectMap [ rr:class sphn:TumorGradeAssessmentEvent ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentEvent-{id}" ] .
@@ -14951,13 +14757,13 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{sphn:hasComponent[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessment-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{sphn:hasComponent[*].id}" ] ;
rr:predicate sphn:hasComponent ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessment-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{sphn:hasRange.id}" ] ;
rr:predicate sphn:hasRange ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sphn:hasResult.id}" ] ;
@@ -14978,19 +14784,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{sphn:hasRange.id}" ] ;
+ rr:predicate sphn:hasRange ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{sphn:hasRange.id}" ] ;
- rr:predicate sphn:hasRange ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasResult[*].id}" ] ;
+ rr:predicate sphn:hasResult ] ;
rr:subjectMap [ rr:class sphn:AssessmentComponent ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{id}" ] .
@@ -15018,14 +14820,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange.sphn:hasLowerLimit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -15081,31 +14883,31 @@
rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')]" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
[ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ] ;
+ rr:predicate sphn:hasStringValue ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:AssessmentResult ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}" ] .
:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasCode_rangesphnCode a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasCode" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ] ;
@@ -15113,7 +14915,7 @@
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sourceConceptID}-sphn-Code-{id}" ] .
:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasCode" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
@@ -15122,7 +14924,7 @@
rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sourceConceptID}-sphn-Code-{termid}" ] .
:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasQuantity" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
@@ -15137,7 +14939,7 @@
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasQuantity.sphn:hasUnit" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasQuantity.sphn:hasUnit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
@@ -15146,119 +14948,7 @@
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}" ] .
:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')]" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
- rr:subjectMap [ rr:class sphn:TumorGradeAssessmentResult ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{id}" ] .
-
-:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasQuantity_rangesphnQuantity a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasQuantity" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
- rr:subjectMap [ rr:class sphn:Quantity ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
-
-:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasQuantity.sphn:hasUnit" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
- rr:subjectMap [ rr:class sphn:Unit ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}" ] .
-
-:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')]" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ] ;
- rr:subjectMap [ rr:class sphn:TumorStageAssessmentResult ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{id}" ] .
-
-:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasQuantity_rangesphnQuantity a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasQuantity" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
- rr:subjectMap [ rr:class sphn:Quantity ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
-
-:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasQuantity.sphn:hasUnit" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
- rr:subjectMap [ rr:class sphn:Unit ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}" ] .
-
-:sphnTumorGradeAssessmentEvent_sphnhasAssessment_rangesphnTumorGradeAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
@@ -15270,10 +14960,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasRange" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasUpperLimit.id}" ] ;
- rr:predicate sphn:hasUpperLimit ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasLowerLimit.id}" ] ;
- rr:predicate sphn:hasLowerLimit ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasLowerLimit.id}" ] ;
+ rr:predicate sphn:hasLowerLimit ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasUpperLimit.id}" ] ;
+ rr:predicate sphn:hasUpperLimit ] ;
rr:subjectMap [ rr:class sphn:Range ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{id}" ] .
@@ -15281,14 +14971,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasRange.sphn:hasLowerLimit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -15314,14 +15004,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasRange.sphn:hasUpperLimit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -15349,11 +15039,11 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
[ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ] ;
+ rr:predicate sphn:hasStringValue ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:TumorGradeAssessmentResult ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{id}" ] .
@@ -15370,14 +15060,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorGradeAssessmentEvent[*].sphn:hasAssessment.sphn:hasResult.sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -15421,41 +15111,41 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorSpecimen[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasPrimaryContainer.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasPrimaryContainer ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].id}" ] ;
rr:predicate sphn:hasMedicalDevice ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rml:reference "sphn:hasSharedIdentifier" ;
- rr:datatype xsd:anyURI ] ;
- rr:predicate sphn:hasSharedIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
+ rr:predicate sphn:hasMedicalDevice ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')].id}" ] ;
rr:predicate sphn:hasMedicalDevice ],
[ rr:objectMap [ rml:reference "sphn:hasCollectionDateTime" ;
rr:datatype xsd:dateTime ] ;
rr:predicate sphn:hasCollectionDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasTumorPurity.id}" ] ;
- rr:predicate sphn:hasTumorPurity ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{id}-sphn-Code-{sphn:hasMaterialTypeCode[*].termid}" ] ;
rr:predicate sphn:hasMaterialTypeCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasPrimaryContainer.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasPrimaryContainer ],
[ rr:objectMap [ rml:reference "sphn:hasFixationType.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasFixationType ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-BodySite-{sphn:hasBodySite.id}" ] ;
rr:predicate sphn:hasBodySite ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasTumorPurity.id}" ] ;
+ rr:predicate sphn:hasTumorPurity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].id}" ] ;
rr:predicate sphn:hasMedicalDevice ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].id}" ] ;
- rr:predicate sphn:hasMedicalDevice ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasSharedIdentifier" ;
+ rr:datatype xsd:anyURI ] ;
+ rr:predicate sphn:hasSharedIdentifier ] ;
rr:subjectMap [ rr:class sphn:TumorSpecimen ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorSpecimen-{id}" ] .
@@ -15510,12 +15200,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorSpecimen[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AccessDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ] ;
rr:subjectMap [ rr:class sphn:AccessDevice ;
@@ -15525,12 +15215,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorSpecimen[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ] ;
@@ -15549,19 +15239,19 @@
:sphnTumorSpecimen_sphnhasMedicalDevice_rangesphnAccessDevice_sphnhasSoftware_rangesphnSoftware a rr:TriplesMap ;
rml:logicalSource [ rml:iterator "$.content.sphn:TumorSpecimen[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ],
- [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
+ rml:source "patient_data_input.json" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasDescription ],
+ rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ] ;
+ rr:predicate sphn:hasDescription ],
+ [ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasUniformResourceLocator ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -15578,12 +15268,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorSpecimen[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Implant-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ] ;
rr:subjectMap [ rr:class sphn:Implant ;
@@ -15593,12 +15283,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorSpecimen[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#Implant')].sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ] ;
@@ -15646,16 +15336,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorSpecimen[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
- rr:predicate sphn:hasSoftware ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicate sphn:hasSoftware ] ;
rr:subjectMap [ rr:class sphn:LabAnalyzer ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{id}" ] .
@@ -15691,15 +15381,15 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasUniformResourceLocator ] ;
+ rr:predicate sphn:hasUniformResourceLocator ],
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasVersion ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -15707,15 +15397,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorSpecimen[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer')].sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-LabAnalyzer-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -15732,16 +15422,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorSpecimen[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
+ rr:predicate sphn:hasProductCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{sphn:hasSoftware[*].id}" ] ;
rr:predicate sphn:hasSoftware ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.id}" ] ;
rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.id}" ] ;
- rr:predicate sphn:hasProductCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}-sphn-Code-{sphn:hasProductCode.termid}" ] ;
- rr:predicate sphn:hasProductCode ] ;
+ rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:MedicalDevice ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{id}" ] .
@@ -15749,15 +15439,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorSpecimen[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasProductCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -15774,18 +15464,18 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorSpecimen[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasSoftware[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasVersion ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasUniformResourceLocator" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasUniformResourceLocator ],
[ rr:objectMap [ rml:reference "sphn:hasDescription" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasDescription ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ [ rr:objectMap [ rml:reference "sphn:hasVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasVersion ] ;
rr:subjectMap [ rr:class sphn:Software ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Software-{id}" ] .
@@ -15793,15 +15483,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorSpecimen[*].sphn:hasMedicalDevice[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice')].sphn:hasTypeCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-MedicalDevice-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -15818,14 +15508,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorSpecimen[*].sphn:hasTumorPurity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -15851,19 +15541,19 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
- rr:datatype xsd:dateTime ] ;
- rr:predicate sphn:hasDateTime ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
+ rr:predicate sphn:hasPerformer ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessment-{sphn:hasAssessment.id}" ] ;
+ rr:predicate sphn:hasAssessment ],
[ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Performer-{sphn:hasPerformer.id}" ] ;
- rr:predicate sphn:hasPerformer ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessment-{sphn:hasAssessment.id}" ] ;
- rr:predicate sphn:hasAssessment ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rml:reference "sphn:hasDateTime" ;
+ rr:datatype xsd:dateTime ] ;
+ rr:predicate sphn:hasDateTime ] ;
rr:subjectMap [ rr:class sphn:TumorStageAssessmentEvent ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentEvent-{id}" ] .
@@ -15871,17 +15561,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sphn:hasResult.id}" ] ;
- rr:predicate sphn:hasResult ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{sphn:hasRange.id}" ] ;
+ rr:predicate sphn:hasRange ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessment-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{sphn:hasRange.id}" ] ;
- rr:predicate sphn:hasRange ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{sphn:hasComponent[*].id}" ] ;
- rr:predicate sphn:hasComponent ] ;
+ rr:predicate sphn:hasComponent ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sphn:hasResult.id}" ] ;
+ rr:predicate sphn:hasResult ] ;
rr:subjectMap [ rr:class sphn:TumorStageAssessment ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessment-{id}" ] .
@@ -15895,169 +15585,58 @@
rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessment-{sourceConceptID}-sphn-Code-{termid}" ] .
:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*]" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{sphn:hasRange.id}" ] ;
- rr:predicate sphn:hasRange ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].id}" ] ;
- rr:predicate sphn:hasResult ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
- rr:subjectMap [ rr:class sphn:AssessmentComponent ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{id}" ] .
-
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasRange_rangesphnRange a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasLowerLimit.id}" ] ;
- rr:predicate sphn:hasLowerLimit ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasUpperLimit.id}" ] ;
- rr:predicate sphn:hasUpperLimit ] ;
- rr:subjectMap [ rr:class sphn:Range ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{id}" ] .
-
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasRange_rangesphnRange_sphnhasLowerLimit_rangesphnQuantity a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange.sphn:hasLowerLimit" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
- rr:subjectMap [ rr:class sphn:Quantity ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
-
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasRange_rangesphnRange_sphnhasLowerLimit_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange.sphn:hasLowerLimit.sphn:hasUnit" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
- rr:subjectMap [ rr:class sphn:Unit ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}" ] .
-
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasRange_rangesphnRange_sphnhasLowerLimit_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange.sphn:hasLowerLimit.sphn:hasUnit.sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasRange_rangesphnRange_sphnhasUpperLimit_rangesphnQuantity a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange.sphn:hasUpperLimit" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
- rr:subjectMap [ rr:class sphn:Quantity ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
-
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasRange_rangesphnRange_sphnhasUpperLimit_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange.sphn:hasUpperLimit.sphn:hasUnit" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
- rr:subjectMap [ rr:class sphn:Unit ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}" ] .
-
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasRange_rangesphnRange_sphnhasUpperLimit_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange.sphn:hasUpperLimit.sphn:hasUnit.sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')]" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ] ;
- rr:subjectMap [ rr:class sphn:AssessmentResult ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}" ] .
-
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasCode_rangesphnCode a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasCode" ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sphn:hasResult[*].id}" ] ;
+ rr:predicate sphn:hasResult ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
- rr:subjectMap [ rr:class sphn:Code ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sourceConceptID}-sphn-Code-{id}" ] .
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{sphn:hasRange.id}" ] ;
+ rr:predicate sphn:hasRange ] ;
+ rr:subjectMap [ rr:class sphn:AssessmentComponent ;
+ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{id}" ] .
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasCode" ;
+:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
rr:termType rr:IRI ] ;
rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sourceConceptID}-sphn-Code-{termid}" ] .
+ rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentComponent-{sourceConceptID}-sphn-Code-{termid}" ] .
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasQuantity" ;
+:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasRange_rangesphnRange a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange" ;
+ rml:referenceFormulation ql:JSONPath ;
+ rml:source "patient_data_input.json" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasUpperLimit.id}" ] ;
+ rr:predicate sphn:hasUpperLimit ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasLowerLimit.id}" ] ;
+ rr:predicate sphn:hasLowerLimit ] ;
+ rr:subjectMap [ rr:class sphn:Range ;
+ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{id}" ] .
+
+:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasRange_rangesphnRange_sphnhasLowerLimit_rangesphnQuantity a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange.sphn:hasLowerLimit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasQuantity.sphn:hasUnit" ;
+:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasRange_rangesphnRange_sphnhasLowerLimit_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange.sphn:hasLowerLimit.sphn:hasUnit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
@@ -16065,8 +15644,8 @@
rr:subjectMap [ rr:class sphn:Unit ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}" ] .
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult')].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
+:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasRange_rangesphnRange_sphnhasLowerLimit_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange.sphn:hasLowerLimit.sphn:hasUnit.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
@@ -16074,46 +15653,23 @@
rr:predicate rdf:type ] ;
rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')]" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
- rr:predicate sphn:hasQuantity ],
- [ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ] ;
- rr:subjectMap [ rr:class sphn:TumorGradeAssessmentResult ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{id}" ] .
-
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasCode" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorGradeAssessmentResult-{sourceConceptID}-sphn-Code-{termid}" ] .
-
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasQuantity_rangesphnQuantity a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasQuantity" ;
+:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasRange_rangesphnRange_sphnhasUpperLimit_rangesphnQuantity a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange.sphn:hasUpperLimit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasQuantity.sphn:hasUnit" ;
+:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasRange_rangesphnRange_sphnhasUpperLimit_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange.sphn:hasUpperLimit.sphn:hasUnit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
@@ -16121,8 +15677,8 @@
rr:subjectMap [ rr:class sphn:Unit ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}" ] .
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorGradeAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult')].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
+:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasRange_rangesphnRange_sphnhasUpperLimit_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasRange.sphn:hasUpperLimit.sphn:hasUnit.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
@@ -16130,31 +15686,49 @@
rr:predicate rdf:type ] ;
rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sourceConceptID}-sphn-Code-{termid}" ] .
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')]" ;
+:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasQuantity.id}" ] ;
rr:predicate sphn:hasQuantity ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
[ rr:objectMap [ rml:reference "sphn:hasStringValue" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasStringValue ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
- rr:subjectMap [ rr:class sphn:TumorStageAssessmentResult ;
- rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{id}" ] .
+ rr:predicate sphn:hasStringValue ] ;
+ rr:subjectMap [ rr:class sphn:AssessmentResult ;
+ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{id}" ] .
+
+:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasCode_rangesphnCode a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasCode" ;
+ rml:referenceFormulation ql:JSONPath ;
+ rml:source "patient_data_input.json" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
+ rr:subjectMap [ rr:class sphn:Code ;
+ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sourceConceptID}-sphn-Code-{id}" ] .
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasCode" ;
+:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
rr:termType rr:IRI ] ;
rr:predicate rdf:type ] ;
- rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-TumorStageAssessmentResult-{sourceConceptID}-sphn-Code-{termid}" ] .
+ rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AssessmentResult-{sourceConceptID}-sphn-Code-{termid}" ] .
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasQuantity_rangesphnQuantity a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasQuantity" ;
+:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
@@ -16168,8 +15742,8 @@
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasQuantity.sphn:hasUnit" ;
+:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasQuantity.sphn:hasUnit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
@@ -16177,8 +15751,8 @@
rr:subjectMap [ rr:class sphn:Unit ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{id}" ] .
-:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnTumorStageAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult')].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
+:sphnTumorStageAssessmentEvent_sphnhasAssessment_rangesphnTumorStageAssessment_sphnhasComponent_rangesphnAssessmentComponent_sphnhasResult_rangesphnAssessmentResult_sphnhasQuantity_rangesphnQuantity_sphnhasUnit_rangesphnUnit_sphnhasCode_rangesphnTerminology a rr:TriplesMap ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasComponent[*].sphn:hasResult[*].sphn:hasQuantity.sphn:hasUnit.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rml:reference "iri" ;
@@ -16190,10 +15764,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasRange" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasUpperLimit.id}" ] ;
- rr:predicate sphn:hasUpperLimit ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasLowerLimit.id}" ] ;
- rr:predicate sphn:hasLowerLimit ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasLowerLimit.id}" ] ;
+ rr:predicate sphn:hasLowerLimit ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasUpperLimit.id}" ] ;
+ rr:predicate sphn:hasUpperLimit ] ;
rr:subjectMap [ rr:class sphn:Range ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Range-{id}" ] .
@@ -16201,14 +15775,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasRange.sphn:hasLowerLimit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -16234,14 +15808,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasRange.sphn:hasUpperLimit" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -16290,14 +15864,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:TumorStageAssessmentEvent[*].sphn:hasAssessment.sphn:hasResult.sphn:hasQuantity" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -16341,49 +15915,49 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
- rr:predicate sphn:hasAdministrativeCase ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
- rr:predicate sphn:hasSubjectPseudoIdentifier ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicInsertion-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{sphn:hasGene[*].id}" ] ;
+ rr:predicate sphn:hasGene ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CopyNumberVariation-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation')].id}" ] ;
rr:predicate sphn:hasGenomicVariation ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
- rr:predicate sphn:hasSourceSystem ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDelins-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDelins')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantDescriptor-{id}-sphn-Code-{sphn:hasAlleleOriginCode.termid}" ] ;
+ rr:predicate sphn:hasAlleleOriginCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicTransposition-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTransposition')].id}" ] ;
rr:predicate sphn:hasGenomicVariation ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GeneFusion-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantDescriptor-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SingleNucleotideVariation-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SingleNucleotideVariation')].id}" ] ;
rr:predicate sphn:hasGenomicVariation ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantNotation-{sphn:hasNotation[*].id}" ] ;
- rr:predicate sphn:hasNotation ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDuplication-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDuplication')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantDescriptor-{id}-sphn-Code-{sphn:hasZygosityCode.termid}" ] ;
+ rr:predicate sphn:hasZygosityCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDeletion-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion')].id}" ] ;
+ rr:predicate sphn:hasGenomicVariation ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDelins-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDelins')].id}" ] ;
rr:predicate sphn:hasGenomicVariation ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantDescriptor-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantDescriptor-{id}-sphn-Code-{sphn:hasZygosityCode.termid}" ] ;
- rr:predicate sphn:hasZygosityCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantDescriptor-{id}-sphn-Code-{sphn:hasAlleleOriginCode.termid}" ] ;
- rr:predicate sphn:hasAlleleOriginCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicVariation-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicVariation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SourceSystem-{sphn:hasSourceSystem[*].id}" ] ;
+ rr:predicate sphn:hasSourceSystem ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDuplication-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDuplication')].id}" ] ;
rr:predicate sphn:hasGenomicVariation ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SingleNucleotideVariation-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SingleNucleotideVariation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicInsertion-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion')].id}" ] ;
+ rr:predicate sphn:hasGenomicVariation ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-AdministrativeCase-{sphn:hasAdministrativeCase.id}" ] ;
+ rr:predicate sphn:hasAdministrativeCase ],
+ [ rr:objectMap [ rr:parentTriplesMap :sphnSubjectPseudoIdentifier ] ;
+ rr:predicate sphn:hasSubjectPseudoIdentifier ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicVariation-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicVariation')].id}" ] ;
rr:predicate sphn:hasGenomicVariation ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantDescriptor-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{sphn:hasGene[*].id}" ] ;
- rr:predicate sphn:hasGene ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicTranslocation-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTranslocation')].id}" ] ;
- rr:predicate sphn:hasGenomicVariation ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantDescriptor-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:parentTriplesMap :sphnDataProvider ] ;
rr:predicate sphn:hasDataProvider ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDeletion-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantNotation-{sphn:hasNotation[*].id}" ] ;
+ rr:predicate sphn:hasNotation ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicTranslocation-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTranslocation')].id}" ] ;
rr:predicate sphn:hasGenomicVariation ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicInversion-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInversion')].id}" ] ;
rr:predicate sphn:hasGenomicVariation ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicTransposition-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTransposition')].id}" ] ;
- rr:predicate sphn:hasGenomicVariation ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CopyNumberVariation-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GeneFusion-{sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].id}" ] ;
rr:predicate sphn:hasGenomicVariation ] ;
rr:subjectMap [ rr:class sphn:VariantDescriptor ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantDescriptor-{id}" ] .
@@ -16404,12 +15978,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-VariantDescriptor-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -16426,16 +16000,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sphn:hasTranscript[*].id}" ] ;
- rr:predicate sphn:hasTranscript ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
- rr:predicate sphn:hasOrganism ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasProtein[*].id}" ] ;
rr:predicate sphn:hasProtein ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
+ rr:predicate sphn:hasOrganism ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sphn:hasTranscript[*].id}" ] ;
+ rr:predicate sphn:hasTranscript ] ;
rr:subjectMap [ rr:class sphn:Gene ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}" ] .
@@ -16443,15 +16017,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -16468,9 +16042,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*].sphn:hasOrganism" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Organism ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}" ] .
@@ -16479,15 +16053,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*].sphn:hasOrganism.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -16504,10 +16078,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*].sphn:hasProtein[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
- rr:predicate sphn:hasOrganism ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
+ rr:predicate sphn:hasOrganism ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Protein ;
@@ -16520,12 +16094,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -16542,9 +16116,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*].sphn:hasProtein[*].sphn:hasOrganism" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Organism ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}" ] .
@@ -16553,15 +16127,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*].sphn:hasProtein[*].sphn:hasOrganism.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -16578,10 +16152,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*].sphn:hasTranscript[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
- rr:predicate sphn:hasOrganism ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
+ rr:predicate sphn:hasOrganism ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasProtein.id}" ] ;
rr:predicate sphn:hasProtein ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
@@ -16593,15 +16167,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*].sphn:hasTranscript[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -16618,9 +16192,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*].sphn:hasTranscript[*].sphn:hasOrganism" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Organism ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}" ] .
@@ -16629,12 +16203,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*].sphn:hasTranscript[*].sphn:hasOrganism.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -16654,12 +16228,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*].sphn:hasTranscript[*].sphn:hasProtein" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
+ rr:predicate sphn:hasOrganism ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
- rr:predicate sphn:hasOrganism ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Protein ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}" ] .
@@ -16667,15 +16241,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*].sphn:hasTranscript[*].sphn:hasProtein.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -16692,9 +16266,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*].sphn:hasTranscript[*].sphn:hasProtein.sphn:hasOrganism" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Organism ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}" ] .
@@ -16703,15 +16277,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGene[*].sphn:hasTranscript[*].sphn:hasProtein.sphn:hasOrganism.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -16728,14 +16302,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasTotalCopyNumber.id}" ] ;
- rr:predicate sphn:hasTotalCopyNumber ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
rr:predicate sphn:hasFeatureLocation ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CopyNumberVariation-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
- rr:predicate sphn:hasTypeCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
- rr:predicate sphn:hasFeatureLocation ] ;
+ rr:predicate sphn:hasFeatureLocation ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasTotalCopyNumber.id}" ] ;
+ rr:predicate sphn:hasTotalCopyNumber ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CopyNumberVariation-{id}-sphn-Code-{sphn:hasTypeCode.termid}" ] ;
+ rr:predicate sphn:hasTypeCode ] ;
rr:subjectMap [ rr:class sphn:CopyNumberVariation ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-CopyNumberVariation-{id}" ] .
@@ -16743,12 +16317,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasChromosome.id}" ] ;
- rr:predicate sphn:hasChromosome ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasEndCytobandCode.id}" ] ;
+ rr:predicate sphn:hasEndCytobandCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasStartCytobandCode.id}" ] ;
rr:predicate sphn:hasStartCytobandCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasEndCytobandCode.id}" ] ;
- rr:predicate sphn:hasEndCytobandCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasChromosome.id}" ] ;
+ rr:predicate sphn:hasChromosome ] ;
rr:subjectMap [ rr:class sphn:ChromosomalLocation ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}" ] .
@@ -16774,12 +16348,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].sphn:hasEndCytobandCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -16790,15 +16364,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].sphn:hasStartCytobandCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -16806,17 +16380,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
- rr:predicate sphn:hasReferenceSequence ],
- [ rr:objectMap [ rml:reference "sphn:hasStart" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasEnd" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasStart ],
+ rr:predicate sphn:hasEnd ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
+ rr:predicate sphn:hasReferenceSequence ],
[ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasCoordinateConvention ],
- [ rr:objectMap [ rml:reference "sphn:hasEnd" ;
+ [ rr:objectMap [ rml:reference "sphn:hasStart" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasEnd ] ;
+ rr:predicate sphn:hasStart ] ;
rr:subjectMap [ rr:class sphn:GenomicPosition ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{id}" ] .
@@ -16835,12 +16409,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].sphn:hasReferenceSequence.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -16860,14 +16434,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation')].sphn:hasTotalCopyNumber" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -16902,14 +16476,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
- rr:predicate sphn:hasFeatureLocation ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GeneFusion-{id}-sphn-Code-{sphn:hasRegulatoryFeature[*].termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GeneFusion-{id}-sphn-Code-{sphn:hasRegulatoryFeature[*].termid}" ] ;
rr:predicate sphn:hasRegulatoryFeature ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
rr:predicate sphn:hasFeatureLocation ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{sphn:hasGene[*].id}" ] ;
- rr:predicate sphn:hasGene ] ;
+ rr:predicate sphn:hasGene ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
+ rr:predicate sphn:hasFeatureLocation ] ;
rr:subjectMap [ rr:class sphn:GeneFusion ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GeneFusion-{id}" ] .
@@ -16948,15 +16522,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].sphn:hasEndCytobandCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -16967,12 +16541,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -16980,17 +16554,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasEnd" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasEnd ],
- [ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasCoordinateConvention ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
- rr:predicate sphn:hasReferenceSequence ],
+ [ rr:objectMap [ rml:reference "sphn:hasEnd" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasEnd ],
[ rr:objectMap [ rml:reference "sphn:hasStart" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasStart ] ;
+ rr:predicate sphn:hasStart ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
+ rr:predicate sphn:hasReferenceSequence ] ;
rr:subjectMap [ rr:class sphn:GenomicPosition ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{id}" ] .
@@ -16998,9 +16572,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].sphn:hasReferenceSequence" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:ReferenceSequence ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}" ] .
@@ -17009,15 +16583,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].sphn:hasReferenceSequence.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -17034,16 +16608,16 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasGene[*]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
- rr:predicate sphn:hasOrganism ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sphn:hasTranscript[*].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{sphn:hasTranscript[*].id}" ] ;
rr:predicate sphn:hasTranscript ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasProtein[*].id}" ] ;
+ rr:predicate sphn:hasProtein ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasProtein[*].id}" ] ;
- rr:predicate sphn:hasProtein ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
+ rr:predicate sphn:hasOrganism ] ;
rr:subjectMap [ rr:class sphn:Gene ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{id}" ] .
@@ -17051,15 +16625,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasGene[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Gene-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -17076,9 +16650,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasGene[*].sphn:hasOrganism" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Organism ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}" ] .
@@ -17087,12 +16661,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasGene[*].sphn:hasOrganism.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ] ;
@@ -17114,9 +16688,9 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
rr:predicate sphn:hasOrganism ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Protein ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}" ] .
@@ -17125,15 +16699,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasGene[*].sphn:hasProtein[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -17150,9 +16724,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasGene[*].sphn:hasProtein[*].sphn:hasOrganism" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Organism ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}" ] .
@@ -17161,15 +16735,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasGene[*].sphn:hasProtein[*].sphn:hasOrganism.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -17183,17 +16757,17 @@
rr:subjectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sourceConceptID}-sphn-Code-{termid}" ] .
:sphnVariantDescriptor_sphnhasGenomicVariation_rangesphnGeneFusion_sphnhasGene_rangesphnGene_sphnhasTranscript_rangesphnTranscript a rr:TriplesMap ;
- rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasGene[*].sphn:hasTranscript[*]" ;
- rml:referenceFormulation ql:JSONPath ;
- rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
- rr:predicate sphn:hasOrganism ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasProtein.id}" ] ;
+ rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasGene[*].sphn:hasTranscript[*]" ;
+ rml:referenceFormulation ql:JSONPath ;
+ rml:source "patient_data_input.json" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{sphn:hasProtein.id}" ] ;
rr:predicate sphn:hasProtein ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
- rr:predicate sphn:hasCode ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
+ rr:predicate sphn:hasOrganism ] ;
rr:subjectMap [ rr:class sphn:Transcript ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Transcript-{id}" ] .
@@ -17201,12 +16775,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasGene[*].sphn:hasTranscript[*].sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ] ;
@@ -17237,15 +16811,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasGene[*].sphn:hasTranscript[*].sphn:hasOrganism.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -17262,12 +16836,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasGene[*].sphn:hasTranscript[*].sphn:hasProtein" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
- rr:predicate sphn:hasCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
+ rr:predicate sphn:hasOrganism ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{sphn:hasOrganism.id}" ] ;
- rr:predicate sphn:hasOrganism ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Protein ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Protein-{id}" ] .
@@ -17300,9 +16874,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GeneFusion')].sphn:hasGene[*].sphn:hasTranscript[*].sphn:hasProtein.sphn:hasOrganism" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:Organism ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Organism-{id}" ] .
@@ -17347,10 +16921,10 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
rr:predicate sphn:hasFeatureLocation ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
- rr:predicate sphn:hasFeatureLocation ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{sphn:hasDeletedSequence.id}" ] ;
- rr:predicate sphn:hasDeletedSequence ] ;
+ rr:predicate sphn:hasDeletedSequence ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
+ rr:predicate sphn:hasFeatureLocation ] ;
rr:subjectMap [ rr:class sphn:GenomicDeletion ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicDeletion-{id}" ] .
@@ -17358,13 +16932,13 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion')].sphn:hasDeletedSequence" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasLiteralSequence" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasLiteralSequence ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.id}" ] ;
rr:predicate sphn:hasDerivedSequence ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasSequenceLength.id}" ] ;
rr:predicate sphn:hasSequenceLength ],
+ [ rr:objectMap [ rml:reference "sphn:hasLiteralSequence" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasLiteralSequence ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.termid}" ] ;
rr:predicate sphn:hasDerivedSequence ] ;
rr:subjectMap [ rr:class sphn:NucleotideSequence ;
@@ -17374,15 +16948,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion')].sphn:hasDeletedSequence.sphn:hasDerivedSequence" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -17399,14 +16973,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion')].sphn:hasDeletedSequence.sphn:hasSequenceLength" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ] ;
+ rr:predicate sphn:hasUnit ],
+ [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasValue ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -17432,12 +17006,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasStartCytobandCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasChromosome.id}" ] ;
+ rr:predicate sphn:hasChromosome ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasStartCytobandCode.id}" ] ;
rr:predicate sphn:hasStartCytobandCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasEndCytobandCode.id}" ] ;
- rr:predicate sphn:hasEndCytobandCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasChromosome.id}" ] ;
- rr:predicate sphn:hasChromosome ] ;
+ rr:predicate sphn:hasEndCytobandCode ] ;
rr:subjectMap [ rr:class sphn:ChromosomalLocation ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}" ] .
@@ -17463,15 +17037,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].sphn:hasEndCytobandCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -17479,12 +17053,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].sphn:hasStartCytobandCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ] ;
@@ -17495,14 +17069,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStart" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasStart ],
+ [ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasCoordinateConvention ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
rr:predicate sphn:hasReferenceSequence ],
- [ rr:objectMap [ rml:reference "sphn:hasStart" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasStart ],
[ rr:objectMap [ rml:reference "sphn:hasEnd" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasEnd ] ;
@@ -17524,15 +17098,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].sphn:hasReferenceSequence.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -17549,10 +17123,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDelins')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasGenomicPosition.id}" ] ;
- rr:predicate sphn:hasGenomicPosition ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{sphn:hasDeletedSequence.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{sphn:hasDeletedSequence.id}" ] ;
rr:predicate sphn:hasDeletedSequence ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasGenomicPosition.id}" ] ;
+ rr:predicate sphn:hasGenomicPosition ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{sphn:hasInsertedSequence.id}" ] ;
rr:predicate sphn:hasInsertedSequence ] ;
rr:subjectMap [ rr:class sphn:GenomicDelins ;
@@ -17562,15 +17136,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDelins')].sphn:hasDeletedSequence" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.id}" ] ;
- rr:predicate sphn:hasDerivedSequence ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.termid}" ] ;
rr:predicate sphn:hasDerivedSequence ],
[ rr:objectMap [ rml:reference "sphn:hasLiteralSequence" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasLiteralSequence ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasSequenceLength.id}" ] ;
- rr:predicate sphn:hasSequenceLength ] ;
+ rr:predicate sphn:hasSequenceLength ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.id}" ] ;
+ rr:predicate sphn:hasDerivedSequence ] ;
rr:subjectMap [ rr:class sphn:NucleotideSequence ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}" ] .
@@ -17581,12 +17155,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -17603,14 +17177,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDelins')].sphn:hasDeletedSequence.sphn:hasSequenceLength" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
- [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -17636,17 +17210,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDelins')].sphn:hasGenomicPosition" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
- rr:predicate sphn:hasReferenceSequence ],
- [ rr:objectMap [ rml:reference "sphn:hasEnd" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStart" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasEnd ],
+ rr:predicate sphn:hasStart ],
[ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasCoordinateConvention ],
- [ rr:objectMap [ rml:reference "sphn:hasStart" ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
+ rr:predicate sphn:hasReferenceSequence ],
+ [ rr:objectMap [ rml:reference "sphn:hasEnd" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasStart ] ;
+ rr:predicate sphn:hasEnd ] ;
rr:subjectMap [ rr:class sphn:GenomicPosition ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{id}" ] .
@@ -17692,13 +17266,13 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasSequenceLength.id}" ] ;
rr:predicate sphn:hasSequenceLength ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.id}" ] ;
- rr:predicate sphn:hasDerivedSequence ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.termid}" ] ;
rr:predicate sphn:hasDerivedSequence ],
[ rr:objectMap [ rml:reference "sphn:hasLiteralSequence" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasLiteralSequence ] ;
+ rr:predicate sphn:hasLiteralSequence ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.id}" ] ;
+ rr:predicate sphn:hasDerivedSequence ] ;
rr:subjectMap [ rr:class sphn:NucleotideSequence ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}" ] .
@@ -17706,12 +17280,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDelins')].sphn:hasInsertedSequence.sphn:hasDerivedSequence" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ] ;
@@ -17731,11 +17305,11 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDelins')].sphn:hasInsertedSequence.sphn:hasSequenceLength" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
- rr:predicate sphn:hasUnit ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasComparator ] ;
@@ -17764,9 +17338,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDuplication')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
rr:predicate sphn:hasFeatureLocation ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
rr:predicate sphn:hasFeatureLocation ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{sphn:hasNucleotideSequence.id}" ] ;
rr:predicate sphn:hasNucleotideSequence ] ;
@@ -17777,12 +17351,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDuplication')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasChromosome.id}" ] ;
- rr:predicate sphn:hasChromosome ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasEndCytobandCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasEndCytobandCode.id}" ] ;
rr:predicate sphn:hasEndCytobandCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasStartCytobandCode.id}" ] ;
- rr:predicate sphn:hasStartCytobandCode ] ;
+ rr:predicate sphn:hasStartCytobandCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasChromosome.id}" ] ;
+ rr:predicate sphn:hasChromosome ] ;
rr:subjectMap [ rr:class sphn:ChromosomalLocation ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}" ] .
@@ -17824,15 +17398,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDuplication')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].sphn:hasStartCytobandCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -17840,17 +17414,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDuplication')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
- rr:predicate sphn:hasReferenceSequence ],
- [ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasCoordinateConvention ],
- [ rr:objectMap [ rml:reference "sphn:hasStart" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasStart" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasStart ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
+ rr:predicate sphn:hasReferenceSequence ],
[ rr:objectMap [ rml:reference "sphn:hasEnd" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasEnd ] ;
+ rr:predicate sphn:hasEnd ],
+ [ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasCoordinateConvention ] ;
rr:subjectMap [ rr:class sphn:GenomicPosition ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{id}" ] .
@@ -17858,9 +17432,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDuplication')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].sphn:hasReferenceSequence" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:ReferenceSequence ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}" ] .
@@ -17869,15 +17443,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDuplication')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].sphn:hasReferenceSequence.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -17894,14 +17468,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDuplication')].sphn:hasNucleotideSequence" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasLiteralSequence" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasSequenceLength.id}" ] ;
+ rr:predicate sphn:hasSequenceLength ],
+ [ rr:objectMap [ rml:reference "sphn:hasLiteralSequence" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasLiteralSequence ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasSequenceLength.id}" ] ;
- rr:predicate sphn:hasSequenceLength ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.termid}" ] ;
- rr:predicate sphn:hasDerivedSequence ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.id}" ] ;
+ rr:predicate sphn:hasDerivedSequence ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.termid}" ] ;
rr:predicate sphn:hasDerivedSequence ] ;
rr:subjectMap [ rr:class sphn:NucleotideSequence ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}" ] .
@@ -17910,12 +17484,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDuplication')].sphn:hasNucleotideSequence.sphn:hasDerivedSequence" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ] ;
@@ -17968,10 +17542,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{sphn:hasInsertedSequence.id}" ] ;
- rr:predicate sphn:hasInsertedSequence ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
rr:predicate sphn:hasFeatureLocation ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{sphn:hasInsertedSequence.id}" ] ;
+ rr:predicate sphn:hasInsertedSequence ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
rr:predicate sphn:hasFeatureLocation ] ;
rr:subjectMap [ rr:class sphn:GenomicInsertion ;
@@ -17981,12 +17555,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasEndCytobandCode.id}" ] ;
- rr:predicate sphn:hasEndCytobandCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasStartCytobandCode.id}" ] ;
+ rr:predicate sphn:hasStartCytobandCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasChromosome.id}" ] ;
rr:predicate sphn:hasChromosome ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasStartCytobandCode.id}" ] ;
- rr:predicate sphn:hasStartCytobandCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasEndCytobandCode.id}" ] ;
+ rr:predicate sphn:hasEndCytobandCode ] ;
rr:subjectMap [ rr:class sphn:ChromosomalLocation ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}" ] .
@@ -18015,12 +17589,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -18028,15 +17602,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].sphn:hasStartCytobandCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -18044,7 +17618,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
+ rr:predicate sphn:hasReferenceSequence ],
+ [ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasCoordinateConvention ],
[ rr:objectMap [ rml:reference "sphn:hasStart" ;
@@ -18052,9 +17628,7 @@
rr:predicate sphn:hasStart ],
[ rr:objectMap [ rml:reference "sphn:hasEnd" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasEnd ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
- rr:predicate sphn:hasReferenceSequence ] ;
+ rr:predicate sphn:hasEnd ] ;
rr:subjectMap [ rr:class sphn:GenomicPosition ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{id}" ] .
@@ -18062,9 +17636,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].sphn:hasReferenceSequence" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:ReferenceSequence ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}" ] .
@@ -18073,12 +17647,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].sphn:hasReferenceSequence.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -18098,15 +17672,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion')].sphn:hasInsertedSequence" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasLiteralSequence" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.id}" ] ;
+ rr:predicate sphn:hasDerivedSequence ],
+ [ rr:objectMap [ rml:reference "sphn:hasLiteralSequence" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasLiteralSequence ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.id}" ] ;
- rr:predicate sphn:hasDerivedSequence ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.termid}" ] ;
- rr:predicate sphn:hasDerivedSequence ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasSequenceLength.id}" ] ;
- rr:predicate sphn:hasSequenceLength ] ;
+ rr:predicate sphn:hasSequenceLength ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.termid}" ] ;
+ rr:predicate sphn:hasDerivedSequence ] ;
rr:subjectMap [ rr:class sphn:NucleotideSequence ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}" ] .
@@ -18117,12 +17691,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ] ;
+ rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -18139,14 +17713,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion')].sphn:hasInsertedSequence.sphn:hasSequenceLength" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ],
[ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasValue ] ;
+ rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{id}" ] .
@@ -18185,12 +17759,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInversion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasEndCytobandCode.id}" ] ;
- rr:predicate sphn:hasEndCytobandCode ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasStartCytobandCode.id}" ] ;
+ rr:predicate sphn:hasStartCytobandCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasChromosome.id}" ] ;
rr:predicate sphn:hasChromosome ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasStartCytobandCode.id}" ] ;
- rr:predicate sphn:hasStartCytobandCode ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasEndCytobandCode.id}" ] ;
+ rr:predicate sphn:hasEndCytobandCode ] ;
rr:subjectMap [ rr:class sphn:ChromosomalLocation ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}" ] .
@@ -18216,15 +17790,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInversion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].sphn:hasEndCytobandCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -18232,12 +17806,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInversion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].sphn:hasStartCytobandCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ] ;
@@ -18251,14 +17825,14 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasCoordinateConvention ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
- rr:predicate sphn:hasReferenceSequence ],
+ [ rr:objectMap [ rml:reference "sphn:hasStart" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasStart ],
[ rr:objectMap [ rml:reference "sphn:hasEnd" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasEnd ],
- [ rr:objectMap [ rml:reference "sphn:hasStart" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasStart ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
+ rr:predicate sphn:hasReferenceSequence ] ;
rr:subjectMap [ rr:class sphn:GenomicPosition ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{id}" ] .
@@ -18277,15 +17851,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInversion')].sphn:hasFeatureLocation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].sphn:hasReferenceSequence.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -18302,14 +17876,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInversion')].sphn:hasNucleotideSequence" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.id}" ] ;
- rr:predicate sphn:hasDerivedSequence ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasSequenceLength.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Quantity-{sphn:hasSequenceLength.id}" ] ;
rr:predicate sphn:hasSequenceLength ],
[ rr:objectMap [ rml:reference "sphn:hasLiteralSequence" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasLiteralSequence ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.termid}" ] ;
+ rr:predicate sphn:hasDerivedSequence ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}-sphn-Code-{sphn:hasDerivedSequence.id}" ] ;
rr:predicate sphn:hasDerivedSequence ] ;
rr:subjectMap [ rr:class sphn:NucleotideSequence ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-NucleotideSequence-{id}" ] .
@@ -18343,12 +17917,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInversion')].sphn:hasNucleotideSequence.sphn:hasSequenceLength" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasComparator ],
- [ rr:objectMap [ rml:reference "sphn:hasValue" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasValue" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasValue ],
+ [ rr:objectMap [ rml:reference "sphn:hasComparator.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasComparator ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Unit-{sphn:hasUnit.id}" ] ;
rr:predicate sphn:hasUnit ] ;
rr:subjectMap [ rr:class sphn:Quantity ;
@@ -18376,9 +17950,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTranslocation')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
rr:predicate sphn:hasBreakpoint ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
rr:predicate sphn:hasBreakpoint ] ;
rr:subjectMap [ rr:class sphn:GenomicTranslocation ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicTranslocation-{id}" ] .
@@ -18389,10 +17963,10 @@
rml:source "patient_data_input.json" ] ;
rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasChromosome.id}" ] ;
rr:predicate sphn:hasChromosome ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasEndCytobandCode.id}" ] ;
- rr:predicate sphn:hasEndCytobandCode ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasStartCytobandCode.id}" ] ;
- rr:predicate sphn:hasStartCytobandCode ] ;
+ rr:predicate sphn:hasStartCytobandCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasEndCytobandCode.id}" ] ;
+ rr:predicate sphn:hasEndCytobandCode ] ;
rr:subjectMap [ rr:class sphn:ChromosomalLocation ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}" ] .
@@ -18418,12 +17992,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTranslocation')].sphn:hasBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].sphn:hasEndCytobandCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ] ;
@@ -18437,12 +18011,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ] ;
+ rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -18450,7 +18024,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTranslocation')].sphn:hasBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasEnd" ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
+ rr:predicate sphn:hasReferenceSequence ],
+ [ rr:objectMap [ rml:reference "sphn:hasEnd" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasEnd ],
[ rr:objectMap [ rml:reference "sphn:hasStart" ;
@@ -18458,9 +18034,7 @@
rr:predicate sphn:hasStart ],
[ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
rr:termType rr:IRI ] ;
- rr:predicate sphn:hasCoordinateConvention ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
- rr:predicate sphn:hasReferenceSequence ] ;
+ rr:predicate sphn:hasCoordinateConvention ] ;
rr:subjectMap [ rr:class sphn:GenomicPosition ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{id}" ] .
@@ -18479,15 +18053,15 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTranslocation')].sphn:hasBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].sphn:hasReferenceSequence.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -18504,13 +18078,13 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTransposition')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasInsertionBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasInsertionBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
rr:predicate sphn:hasInsertionBreakpoint ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasDeletionBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasDeletionBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
rr:predicate sphn:hasDeletionBreakpoint ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasInsertionBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasInsertionBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
rr:predicate sphn:hasInsertionBreakpoint ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sphn:hasDeletionBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')].id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasDeletionBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].id}" ] ;
rr:predicate sphn:hasDeletionBreakpoint ] ;
rr:subjectMap [ rr:class sphn:GenomicTransposition ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicTransposition-{id}" ] .
@@ -18582,17 +18156,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTransposition')].sphn:hasDeletionBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
- rr:predicate sphn:hasReferenceSequence ],
- [ rr:objectMap [ rml:reference "sphn:hasEnd" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasEnd" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasEnd ],
- [ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasCoordinateConvention ],
[ rr:objectMap [ rml:reference "sphn:hasStart" ;
rr:datatype xsd:double ] ;
- rr:predicate sphn:hasStart ] ;
+ rr:predicate sphn:hasStart ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
+ rr:predicate sphn:hasReferenceSequence ],
+ [ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasCoordinateConvention ] ;
rr:subjectMap [ rr:class sphn:GenomicPosition ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{id}" ] .
@@ -18611,12 +18185,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTransposition')].sphn:hasDeletionBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].sphn:hasReferenceSequence.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -18636,10 +18210,10 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTransposition')].sphn:hasInsertionBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasChromosome.id}" ] ;
- rr:predicate sphn:hasChromosome ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasEndCytobandCode.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasEndCytobandCode.id}" ] ;
rr:predicate sphn:hasEndCytobandCode ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Chromosome-{sphn:hasChromosome.id}" ] ;
+ rr:predicate sphn:hasChromosome ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{id}-sphn-Code-{sphn:hasStartCytobandCode.id}" ] ;
rr:predicate sphn:hasStartCytobandCode ] ;
rr:subjectMap [ rr:class sphn:ChromosomalLocation ;
@@ -18686,12 +18260,12 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasCodingSystemAndVersion ] ;
+ rr:predicate sphn:hasCodingSystemAndVersion ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ] ;
rr:subjectMap [ rr:class sphn:Code ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ChromosomalLocation-{sourceConceptID}-sphn-Code-{id}" ] .
@@ -18699,17 +18273,17 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTransposition')].sphn:hasInsertionBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasEnd" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasEnd ],
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasCoordinateConvention ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
rr:predicate sphn:hasReferenceSequence ],
[ rr:objectMap [ rml:reference "sphn:hasStart" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasStart ],
- [ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasCoordinateConvention ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasEnd" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasEnd ] ;
rr:subjectMap [ rr:class sphn:GenomicPosition ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{id}" ] .
@@ -18717,9 +18291,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTransposition')].sphn:hasInsertionBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].sphn:hasReferenceSequence" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:ReferenceSequence ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}" ] .
@@ -18728,12 +18302,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicTransposition')].sphn:hasInsertionBreakpoint[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition')].sphn:hasReferenceSequence.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
- [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasName ],
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -18760,14 +18334,14 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SingleNucleotideVariation')]" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasAlternateAllele" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasReferenceAllele" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasAlternateAllele ],
+ rr:predicate sphn:hasReferenceAllele ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{sphn:hasGenomicPosition.id}" ] ;
rr:predicate sphn:hasGenomicPosition ],
- [ rr:objectMap [ rml:reference "sphn:hasReferenceAllele" ;
+ [ rr:objectMap [ rml:reference "sphn:hasAlternateAllele" ;
rr:datatype xsd:string ] ;
- rr:predicate sphn:hasReferenceAllele ] ;
+ rr:predicate sphn:hasAlternateAllele ] ;
rr:subjectMap [ rr:class sphn:SingleNucleotideVariation ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SingleNucleotideVariation-{id}" ] .
@@ -18778,14 +18352,14 @@
rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCoordinateConvention.iri" ;
rr:termType rr:IRI ] ;
rr:predicate sphn:hasCoordinateConvention ],
+ [ rr:objectMap [ rml:reference "sphn:hasStart" ;
+ rr:datatype xsd:double ] ;
+ rr:predicate sphn:hasStart ],
[ rr:objectMap [ rml:reference "sphn:hasEnd" ;
rr:datatype xsd:double ] ;
rr:predicate sphn:hasEnd ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{sphn:hasReferenceSequence.id}" ] ;
- rr:predicate sphn:hasReferenceSequence ],
- [ rr:objectMap [ rml:reference "sphn:hasStart" ;
- rr:datatype xsd:double ] ;
- rr:predicate sphn:hasStart ] ;
+ rr:predicate sphn:hasReferenceSequence ] ;
rr:subjectMap [ rr:class sphn:GenomicPosition ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-GenomicPosition-{id}" ] .
@@ -18793,9 +18367,9 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SingleNucleotideVariation')].sphn:hasGenomicPosition.sphn:hasReferenceSequence" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
rr:predicate sphn:hasCode ],
- [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.id}" ] ;
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}-sphn-Code-{sphn:hasCode.termid}" ] ;
rr:predicate sphn:hasCode ] ;
rr:subjectMap [ rr:class sphn:ReferenceSequence ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-ReferenceSequence-{id}" ] .
@@ -18804,12 +18378,12 @@
rml:logicalSource [ rml:iterator "$.content.sphn:VariantDescriptor[*].sphn:hasGenomicVariation[?(@.target_concept=='https://biomedit.ch/rdf/sphn-schema/sphn#SingleNucleotideVariation')].sphn:hasGenomicPosition.sphn:hasReferenceSequence.sphn:hasCode" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasName" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasName ],
- [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasIdentifier ],
+ [ rr:objectMap [ rml:reference "sphn:hasName" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasName ],
[ rr:objectMap [ rml:reference "sphn:hasCodingSystemAndVersion" ;
rr:datatype xsd:string ] ;
rr:predicate sphn:hasCodingSystemAndVersion ] ;
@@ -18860,13 +18434,13 @@
rml:logicalSource [ rml:iterator "$.sphn:DataProvider" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Department-{sphn:hasDepartment.id}" ] ;
+ rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasCategory.iri" ;
+ rr:termType rr:IRI ] ;
+ rr:predicate sphn:hasCategory ],
+ [ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-Department-{sphn:hasDepartment.id}" ] ;
rr:predicate sphn:hasDepartment ],
[ rr:objectMap [ rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProvider-{id}-sphn-Code-{sphn:hasInstitutionCode.id}" ] ;
- rr:predicate sphn:hasInstitutionCode ],
- [ rr:objectMap [ rml:reference "sphn:hasCategory.iri" ;
- rr:termType rr:IRI ] ;
- rr:predicate sphn:hasCategory ] ;
+ rr:predicate sphn:hasInstitutionCode ] ;
rr:subjectMap [ rr:class sphn:DataProvider ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-DataProvider-{id}" ] .
@@ -18874,13 +18448,13 @@
rml:logicalSource [ rml:iterator "$.sphn:SubjectPseudoIdentifier" ;
rml:referenceFormulation ql:JSONPath ;
rml:source "patient_data_input.json" ] ;
- rr:predicateObjectMap [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
- rr:datatype xsd:string ] ;
- rr:predicate sphn:hasIdentifier ],
+ rr:predicateObjectMap [ rr:objectMap [ rr:parentTriplesMap :sphnDataProvider ] ;
+ rr:predicate sphn:hasDataProvider ],
[ rr:objectMap [ rml:reference "sphn:hasSharedIdentifier" ;
rr:datatype xsd:anyURI ] ;
rr:predicate sphn:hasSharedIdentifier ],
- [ rr:objectMap [ rr:parentTriplesMap :sphnDataProvider ] ;
- rr:predicate sphn:hasDataProvider ] ;
+ [ rr:objectMap [ rml:reference "sphn:hasIdentifier" ;
+ rr:datatype xsd:string ] ;
+ rr:predicate sphn:hasIdentifier ] ;
rr:subjectMap [ rr:class sphn:SubjectPseudoIdentifier ;
rr:template "https://biomedit.ch/rdf/sphn-resource/DATA-PROVIDER-ID-sphn-SubjectPseudoIdentifier-{id}" ] .
diff --git a/schemas/pre-release-testing/sphn_rdf_schema.ttl b/schemas/pre-release-testing/sphn_rdf_schema.ttl
index b9a9fa548721fead9f92f736f206179debdd4eb2..37a6314a89aee42b6f3edc060acf77b176b6a71b 100644
--- a/schemas/pre-release-testing/sphn_rdf_schema.ttl
+++ b/schemas/pre-release-testing/sphn_rdf_schema.ttl
@@ -1426,30 +1426,12 @@ sphn-deprecated:CentralVenousPressure a owl:Class ;
owl:deprecated true ;
skos:definition "Central Venous Pressure" .
-sphn-deprecated:GenomicDeletion a owl:Class ;
- rdfs:label "Genomic Deletion" ;
- rdfs:subClassOf sphn:Deprecated ;
- owl:deprecated true ;
- skos:definition "Genomic Deletion" .
-
-sphn-deprecated:GenomicInsertion a owl:Class ;
- rdfs:label "Genomic Insertion" ;
- rdfs:subClassOf sphn:Deprecated ;
- owl:deprecated true ;
- skos:definition "Genomic Insertion" .
-
sphn-deprecated:MeasurementMethod a owl:Class ;
rdfs:label "Measurement Method" ;
rdfs:subClassOf sphn:Deprecated ;
owl:deprecated true ;
skos:definition "Measurement Method" .
-sphn-deprecated:SingleNucleotideVariation a owl:Class ;
- rdfs:label "Single Nucleotide Variation" ;
- rdfs:subClassOf sphn:Deprecated ;
- owl:deprecated true ;
- skos:definition "Single Nucleotide Variation" .
-
sphn-deprecated:SystemicArterialBloodPressure a owl:Class ;
rdfs:label "Systemic Arterial Blood Pressure" ;
rdfs:subClassOf sphn:Deprecated ;
@@ -1467,9 +1449,9 @@ sphn-hgnc:HGNC rdfs:subClassOf sphn:Terminology .
<https://biomedit.ch/rdf/sphn-schema/sphn> a owl:Ontology ;
dc:description "The SPHN RDF Schema describing concepts defined in the official SPHN Dataset" ;
dc:rights "© Copyright 2025, Personalized Health Informatics Group (PHI), SIB Swiss Institute of Bioinformatics" ;
- dc:title "The SPHN RDF Schema" ;
+ dc:title "The SPHN RDF Schema Pre-Release 2025.1" ;
dcterms:bibliographicCitation "https://doi.org/10.1038/s41597-023-02028-y" ;
- dcterms:created "2024-10-08T08:05:54" ;
+ dcterms:created "2024-10-14T11:55:05" ;
dcterms:license <https://creativecommons.org/licenses/by/4.0/> ;
owl:imports <http://purl.obolibrary.org/obo/eco/releases/2023-09-03/eco.owl>,
<http://purl.obolibrary.org/obo/genepio/releases/2023-08-19/genepio.owl>,
@@ -2233,10 +2215,6 @@ icd-o-3:ICDOsixthDigit rdfs:subClassOf sphn-icd-o-3:ICD-O-3 .
icd-o-3:ImmunophenoTypeCode rdfs:subClassOf sphn-icd-o-3:ICD-O-3 .
-icd-o-3:MorphologicalGroup rdfs:subClassOf sphn-icd-o-3:ICD-O-3 .
-
-icd-o-3:TopographyGroup rdfs:subClassOf sphn-icd-o-3:ICD-O-3 .
-
edam:operation_0004 rdfs:subClassOf sphn-edam:EDAM .
eco:0000217 rdfs:subClassOf sphn-eco:ECO .
@@ -2295,6 +2273,12 @@ sphn-deprecated:FOPHProcedure a owl:Class ;
owl:deprecated true ;
skos:definition "FOPH Procedure" .
+sphn-deprecated:GeneticVariation a owl:Class ;
+ rdfs:label "Genetic Variation" ;
+ rdfs:subClassOf sphn:Deprecated ;
+ owl:deprecated true ;
+ skos:definition "Genetic Variation" .
+
sphn-deprecated:ICDODiagnosis a owl:Class ;
rdfs:label "ICD-O Diagnosis" ;
rdfs:subClassOf sphn:Deprecated ;
@@ -2323,6 +2307,8 @@ chop:CHOP rdfs:subClassOf sphn:Terminology .
sphn-efo:EFO rdfs:subClassOf sphn:Terminology .
+oncotree:TISSUE rdfs:subClassOf sphn:Terminology .
+
ucum:UCUM rdfs:subClassOf sphn:Terminology .
sphn:GenomicTranslocation a owl:Class ;
@@ -2333,11 +2319,15 @@ sphn:GenomicTranslocation a owl:Class ;
owl:onProperty sphn:hasBreakpoint ] [ a owl:Restriction ;
owl:onProperty sphn:hasBreakpoint ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:GenomicPosition sphn:ChromosomalLocation ) ] ] ) ],
+ owl:unionOf ( sphn:ChromosomalLocation sphn:GenomicPosition ) ] ] ) ],
sphn:GenomicVariation ;
owl:equivalentClass so:0000199 ;
skos:definition "a sequence change where, compared to a reference sequence, from a specific nucleotide position (the break point), all nucleotides upstream derive from another chromosome then those downstream" .
+icd-o-3:MorphologicalGroup rdfs:subClassOf sphn-icd-o-3:ICD-O-3 .
+
+icd-o-3:TopographyGroup rdfs:subClassOf sphn-icd-o-3:ICD-O-3 .
+
edam:format_1915 rdfs:subClassOf sphn-edam:EDAM .
sphn-deprecated:CircumferenceMeasure a owl:Class ;
@@ -2378,7 +2368,7 @@ sphn:GenomicDuplication a owl:Class ;
owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
owl:onProperty sphn:hasFeatureLocation ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:GenomicPosition sphn:ChromosomalLocation ) ] ] ) ],
+ owl:unionOf ( sphn:ChromosomalLocation sphn:GenomicPosition ) ] ] ) ],
sphn:GenomicVariation ;
owl:equivalentClass so:1000035 ;
skos:definition "sequence alteration where, in comparison to a reference sequence, an additional copy of one or more nucleotides or amino acids is inserted immediately downstream of the original sequence at the 3' end" .
@@ -2386,15 +2376,6 @@ sphn:GenomicDuplication a owl:Class ;
sphn:GenomicInversion a owl:Class ;
rdfs:label "Genomic Inversion" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
- owl:onProperty sphn:hasFeatureLocation ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:GenomicPosition sphn:ChromosomalLocation ) ] ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasNucleotideSequence ] [ a owl:Restriction ;
@@ -2402,6 +2383,15 @@ sphn:GenomicInversion a owl:Class ;
owl:onProperty sphn:hasNucleotideSequence ] [ a owl:Restriction ;
owl:onProperty sphn:hasNucleotideSequence ;
owl:someValuesFrom sphn:NucleotideSequence ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFeatureLocation ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( sphn:ChromosomalLocation sphn:GenomicPosition ) ] ] ) ],
sphn:GenomicVariation ;
owl:equivalentClass so:1000036 ;
skos:definition "a sequence change where, compared to a reference sequence, more than one nucleotide replacing the original sequence is the reverse complement of the original sequence" .
@@ -2416,7 +2406,7 @@ sphn:GenomicTransposition a owl:Class ;
owl:onProperty sphn:hasDeletionBreakpoint ] [ a owl:Restriction ;
owl:onProperty sphn:hasDeletionBreakpoint ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:GenomicPosition sphn:ChromosomalLocation ) ] ] ) ],
+ owl:unionOf ( sphn:ChromosomalLocation sphn:GenomicPosition ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -2425,7 +2415,7 @@ sphn:GenomicTransposition a owl:Class ;
owl:onProperty sphn:hasInsertionBreakpoint ] [ a owl:Restriction ;
owl:onProperty sphn:hasInsertionBreakpoint ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:GenomicPosition sphn:ChromosomalLocation ) ] ] ) ],
+ owl:unionOf ( sphn:ChromosomalLocation sphn:GenomicPosition ) ] ] ) ],
sphn:GenomicVariation ;
owl:equivalentClass so:0000453 ;
skos:definition "a genomic alteration in which a large segment of DNA is relocated from one site in the genome to a different site, when compared to a reference sequence." .
@@ -2806,7 +2796,7 @@ sphn:GenomicDeletion a owl:Class ;
owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
owl:onProperty sphn:hasFeatureLocation ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:GenomicPosition sphn:ChromosomalLocation ) ] ] ) ],
+ owl:unionOf ( sphn:ChromosomalLocation sphn:GenomicPosition ) ] ] ) ],
sphn:GenomicVariation ;
owl:equivalentClass so:0000159 ;
skos:definition "genetic variant involving the deletion of a specific location in a DNA sequence" .
@@ -2821,7 +2811,7 @@ sphn:GenomicInsertion a owl:Class ;
owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
owl:onProperty sphn:hasFeatureLocation ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:GenomicPosition sphn:ChromosomalLocation ) ] ] ) ],
+ owl:unionOf ( sphn:ChromosomalLocation sphn:GenomicPosition ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -2849,7 +2839,7 @@ sphn:Laterality a owl:Class ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:24028007 snomed:66459002 snomed:7771000 snomed:51440002 ) ] ] ) ],
+ owl:unionOf ( snomed:51440002 snomed:7771000 snomed:66459002 snomed:24028007 ) ] ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass loinc:20228-3 ;
skos:definition "localization with respect to the side of the body" ;
@@ -2904,12 +2894,6 @@ sphn:SequencingInstrument a owl:Class ;
sphn:SingleNucleotideVariation a owl:Class ;
rdfs:label "Single Nucleotide Variation" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasReferenceAllele ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasReferenceAllele ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasGenomicPosition ] [ a owl:Restriction ;
@@ -2923,6 +2907,12 @@ sphn:SingleNucleotideVariation a owl:Class ;
owl:onProperty sphn:hasAlternateAllele ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAlternateAllele ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasReferenceAllele ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasReferenceAllele ] ) ],
sphn:GenomicVariation ;
owl:equivalentClass so:0001483 ;
skos:definition "single nucleotide change in a DNA sequence at a specific location" .
@@ -3175,14 +3165,6 @@ sphn:hasExposure a owl:ObjectProperty ;
rdfs:subPropertyOf sphn:SPHNAttributeObject ;
skos:definition "exposure associated to the concept" .
-sphn:hasFlowRate a owl:ObjectProperty ;
- rdfs:label "has flow rate" ;
- rdfs:domain [ a owl:Class ;
- owl:unionOf ( sphn:OxygenAdministrationEvent sphn:SPHNConcept ) ] ;
- rdfs:range sphn:Quantity ;
- rdfs:subPropertyOf sphn:hasQuantity ;
- skos:definition "flow rate associated to the concept" .
-
sphn:hasFractionOfInspiredOxygen a owl:ObjectProperty ;
rdfs:label "has fraction of inspired oxygen" ;
rdfs:domain [ a owl:Class ;
@@ -3191,14 +3173,6 @@ sphn:hasFractionOfInspiredOxygen a owl:ObjectProperty ;
rdfs:subPropertyOf sphn:SPHNAttributeObject ;
skos:definition "fraction of inspired oxygen associated to the concept" .
-sphn:hasFractionsNumber a owl:ObjectProperty ;
- rdfs:label "has fractions number" ;
- rdfs:domain [ a owl:Class ;
- owl:unionOf ( sphn:RadiotherapyProcedure sphn:SPHNConcept ) ] ;
- rdfs:range sphn:Quantity ;
- rdfs:subPropertyOf sphn:hasQuantity ;
- skos:definition "number of fractions applied during an event" .
-
sphn:hasFrequency a owl:ObjectProperty ;
rdfs:label "has frequency" ;
rdfs:domain [ a owl:Class ;
@@ -3504,7 +3478,7 @@ sphn:Allergen a owl:Class ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn-atc:ATC snomed:138875005 sphn:Code ) ] ] ) ],
+ owl:unionOf ( snomed:138875005 sphn:Code sphn-atc:ATC ) ] ] ) ],
sphn:SPHNConcept ;
skos:definition "any substance, product or physical force producing immediate hypersensitivity" ;
skos:note "sphn:hasCode allowed coding system: SNOMED CT, ATC, GTIN" .
@@ -3522,12 +3496,6 @@ sphn:BodySurfaceArea_calculationMethod a owl:Class ;
sphn:Circumference a owl:Class ;
rdfs:label "Circumference" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
@@ -3535,6 +3503,12 @@ sphn:Circumference a owl:Class ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
owl:onProperty sphn:hasQuantity ;
owl:someValuesFrom sphn:Quantity ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] ) ],
sphn:Result ;
owl:equivalentClass snomed:248365001 ;
skos:definition "circumference of a body site" ;
@@ -3543,12 +3517,6 @@ sphn:Circumference a owl:Class ;
sphn:FractionOfInspiredOxygen a owl:Class ;
rdfs:label "Fraction Of Inspired Oxygen" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
@@ -3562,6 +3530,12 @@ sphn:FractionOfInspiredOxygen a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom ucum:percent ] ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] ) ],
sphn:Result ;
owl:equivalentClass snomed:250774007 ;
skos:definition "value of the fraction of inspired oxygen (FiO2) in a defined setting" .
@@ -3569,6 +3543,15 @@ sphn:FractionOfInspiredOxygen a owl:Class ;
sphn:GeneFusion a owl:Class ;
rdfs:label "Gene Fusion" ;
rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFeatureLocation ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( sphn:ChromosomalLocation sphn:GenomicPosition ) ] ] ) ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasGene ] [ a owl:Restriction ;
@@ -3580,15 +3563,6 @@ sphn:GeneFusion a owl:Class ;
owl:onProperty sphn:hasRegulatoryFeature ] [ a owl:Restriction ;
owl:onProperty sphn:hasRegulatoryFeature ;
owl:someValuesFrom so:0005836 ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
- owl:onProperty sphn:hasFeatureLocation ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:GenomicPosition sphn:ChromosomalLocation ) ] ] ) ],
sphn:GenomicVariation ;
owl:equivalentClass so:0001565 ;
skos:definition "the joining of two or more genes resulting in a chimeric transcript and/or a novel interaction" .
@@ -3596,17 +3570,17 @@ sphn:GeneFusion a owl:Class ;
sphn:GenePanel a owl:Class ;
rdfs:label "Gene Panel" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDataFile ;
- owl:someValuesFrom sphn:DataFile ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasFocusGene ] [ a owl:Restriction ;
owl:onProperty sphn:hasFocusGene ;
owl:someValuesFrom sphn:Gene ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDataFile ;
+ owl:someValuesFrom sphn:DataFile ] ) ],
sphn:SPHNConcept ;
skos:definition "collection of genes that have been grouped for testing" ;
skos:scopeNote "For sphn:hasDataFile, instances of sphn:TimeSeriesDataFile are not allowed" .
@@ -3616,11 +3590,11 @@ sphn:GenomicDelins a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasInsertedSequence ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasGenomicPosition ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasInsertedSequence ] [ a owl:Restriction ;
- owl:onProperty sphn:hasInsertedSequence ;
- owl:someValuesFrom sphn:NucleotideSequence ] ) ],
+ owl:onProperty sphn:hasGenomicPosition ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasGenomicPosition ;
+ owl:someValuesFrom sphn:GenomicPosition ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -3632,11 +3606,11 @@ sphn:GenomicDelins a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasGenomicPosition ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasInsertedSequence ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasGenomicPosition ] [ a owl:Restriction ;
- owl:onProperty sphn:hasGenomicPosition ;
- owl:someValuesFrom sphn:GenomicPosition ] ) ],
+ owl:onProperty sphn:hasInsertedSequence ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasInsertedSequence ;
+ owl:someValuesFrom sphn:NucleotideSequence ] ) ],
sphn:GenomicVariation ;
owl:equivalentClass so:1000032 ;
skos:definition "genomic variation in which one or more nucleotides are replaced by different nucleotides relative to a reference sequence, and it is neither a substitution nor an inversion" .
@@ -3702,14 +3676,6 @@ sphn:ReferenceSequence a owl:Class ;
sphn:SubjectPseudoIdentifier a owl:Class ;
rdfs:label "Subject Pseudo Identifier" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDataProvider ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDataProvider ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDataProvider ;
- owl:someValuesFrom sphn:DataProvider ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasIdentifier ] [ a owl:Restriction ;
@@ -3721,16 +3687,21 @@ sphn:SubjectPseudoIdentifier a owl:Class ;
owl:onProperty sphn:hasSharedIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSharedIdentifier ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDataProvider ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDataProvider ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDataProvider ;
+ owl:someValuesFrom sphn:DataProvider ] ) ],
sphn:SPHNConcept ;
skos:definition "a coded unique identifier assigned by a data provider for a specific project to conceal the identity of an individual" ;
sphn:subjectToDeIdentification true .
sphn:TherapeuticArea a owl:Class ;
rdfs:label "Therapeutic Area" ;
- rdfs:subClassOf [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
+ rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSpecialtyName ] [ a owl:Restriction ;
@@ -3738,6 +3709,9 @@ sphn:TherapeuticArea a owl:Class ;
owl:onProperty sphn:hasSpecialtyName ] [ a owl:Restriction ;
owl:onProperty sphn:hasSpecialtyName ;
owl:someValuesFrom sphn:TherapeuticArea_specialtyName ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:394658006 ;
skos:definition "professional health care specialization" .
@@ -3761,7 +3735,7 @@ sphn:Transplant a owl:Class ;
owl:onProperty sphn:hasGraftTypeCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasGraftTypeCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:7970006 snomed:15879007 ) ] ] ) ],
+ owl:unionOf ( snomed:15879007 snomed:7970006 ) ] ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:24486003 ;
skos:definition "transplanted organ or tissue from self or donor, including, e.g., kidney graft or bone marrow fluid" ;
@@ -3770,31 +3744,23 @@ sphn:Transplant a owl:Class ;
sphn:VariantNotation a owl:Class ;
rdfs:label "Variant Notation" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasValue ] [ a owl:Restriction ;
- owl:onProperty sphn:hasValue ;
- owl:someValuesFrom xsd:string ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCodingSystemAndVersion ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCodingSystemAndVersion ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasValue ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasValue ;
+ owl:someValuesFrom xsd:string ] ) ],
sphn:SPHNConcept ;
skos:definition "description of the variant using a specific nomenclature" .
sphn:VitalStatus a owl:Class ;
rdfs:label "Vital Status" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDeath ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDeath ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDeath ;
- owl:someValuesFrom sphn:Death ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
@@ -3803,6 +3769,14 @@ sphn:VitalStatus a owl:Class ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
owl:unionOf ( snomed:399307001 snomed:438949009 ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDeath ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDeath ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDeath ;
+ owl:someValuesFrom sphn:Death ] ) ],
sphn:Result ;
skos:definition "state or condition of being living or deceased" ;
skos:scopeNote "sphn:hasCode no subclasses allowed" ;
@@ -3882,6 +3856,22 @@ sphn:hasEntryCount a owl:ObjectProperty ;
rdfs:subPropertyOf sphn:hasQuantity ;
skos:definition "count of entries in the concept" .
+sphn:hasFlowRate a owl:ObjectProperty ;
+ rdfs:label "has flow rate" ;
+ rdfs:domain [ a owl:Class ;
+ owl:unionOf ( sphn:OxygenAdministrationEvent sphn:SPHNConcept ) ] ;
+ rdfs:range sphn:Quantity ;
+ rdfs:subPropertyOf sphn:hasQuantity ;
+ skos:definition "flow rate associated to the concept" .
+
+sphn:hasFractionsNumber a owl:ObjectProperty ;
+ rdfs:label "has fractions number" ;
+ rdfs:domain [ a owl:Class ;
+ owl:unionOf ( sphn:RadiotherapyProcedure sphn:SPHNConcept ) ] ;
+ rdfs:range sphn:Quantity ;
+ rdfs:subPropertyOf sphn:hasQuantity ;
+ skos:definition "number of fractions applied during an event" .
+
sphn:hasGene a owl:ObjectProperty ;
rdfs:label "has gene" ;
rdfs:domain [ a owl:Class ;
@@ -4049,6 +4039,12 @@ sphn:hasYear a owl:DatatypeProperty ;
sphn:AdministrativeSex a owl:Class ;
rdfs:label "Administrative Sex" ;
rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRecordDateTime ] ) ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
@@ -4066,12 +4062,6 @@ sphn:AdministrativeSex a owl:Class ;
[ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRecordDateTime ] ) ],
sphn:SPHNConcept ;
skos:definition "the sex of the individual used for administrative purposes" ;
skos:scopeNote "sphn:hasCode no subclasses allowed" ;
@@ -4080,6 +4070,12 @@ sphn:AdministrativeSex a owl:Class ;
sphn:Admission a owl:Class ;
rdfs:label "Admission" ;
rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] ) ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasOriginLocation ] [ a owl:Restriction ;
@@ -4087,12 +4083,6 @@ sphn:Admission a owl:Class ;
owl:onProperty sphn:hasOriginLocation ] [ a owl:Restriction ;
owl:onProperty sphn:hasOriginLocation ;
owl:someValuesFrom sphn:Location ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:305056002 ;
skos:definition "admission of a patient to the healthcare provider institute" .
@@ -4100,14 +4090,6 @@ sphn:Admission a owl:Class ;
sphn:BodyHeight a owl:Class ;
rdfs:label "Body Height" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDataDetermination ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDataDetermination ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDataDetermination ;
- owl:someValuesFrom sphn:DataDetermination ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
@@ -4121,6 +4103,14 @@ sphn:BodyHeight a owl:Class ;
owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDataDetermination ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDataDetermination ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDataDetermination ;
+ owl:someValuesFrom sphn:DataDetermination ] ) ],
sphn:Result ;
owl:equivalentClass snomed:50373000,
loinc:8302-2 ;
@@ -4131,11 +4121,11 @@ sphn:BodyTemperature a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDataFile ;
- owl:someValuesFrom sphn:TimeSeriesDataFile ] ) ],
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasQuantity ;
+ owl:someValuesFrom sphn:Quantity ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -4145,11 +4135,11 @@ sphn:BodyTemperature a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasQuantity ;
- owl:someValuesFrom sphn:Quantity ] ) ],
+ owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDataFile ;
+ owl:someValuesFrom sphn:TimeSeriesDataFile ] ) ],
sphn:Result ;
owl:equivalentClass snomed:386725007,
loinc:8310-5 ;
@@ -4187,6 +4177,14 @@ sphn:BodyWeight a owl:Class ;
sphn:CardiacOutput a owl:Class ;
rdfs:label "Cardiac Output" ;
rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasQuantity ;
+ owl:someValuesFrom sphn:Quantity ] ) ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
@@ -4200,14 +4198,6 @@ sphn:CardiacOutput a owl:Class ;
owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
owl:onProperty sphn:hasDataFile ;
owl:someValuesFrom sphn:TimeSeriesDataFile ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasQuantity ;
- owl:someValuesFrom sphn:Quantity ] ) ],
sphn:Result ;
owl:equivalentClass snomed:82799009 ;
skos:definition "volume of blood passing through the heart per unit of time" .
@@ -4222,7 +4212,7 @@ sphn:CareHandling a owl:Class ;
owl:onProperty sphn:hasTypeCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasTypeCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:304903009 snomed:394656005 snomed:371883000 ) ] ] ) ],
+ owl:unionOf ( snomed:371883000 snomed:304903009 snomed:394656005 ) ] ] ) ],
[ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
@@ -4234,6 +4224,15 @@ sphn:CareHandling a owl:Class ;
sphn:CivilStatus a owl:Class ;
rdfs:label "Civil Status" ;
rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:33553000 snomed:87915002 snomed:266945001 snomed:20295000 snomed:14012001 snomed:125681006 ) ] ] ) ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
@@ -4245,15 +4244,6 @@ sphn:CivilStatus a owl:Class ;
owl:onProperty sphn:hasEventDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasEventDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:266945001 snomed:20295000 snomed:87915002 snomed:14012001 snomed:125681006 snomed:33553000 ) ] ] ) ],
[ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
@@ -4272,7 +4262,16 @@ sphn:CopyNumberVariation a owl:Class ;
owl:onProperty sphn:hasTypeCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasTypeCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( so:0001742 so:0001743 ) ] ] ) ],
+ owl:unionOf ( so:0001743 so:0001742 ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFeatureLocation ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( sphn:ChromosomalLocation sphn:GenomicPosition ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -4287,15 +4286,6 @@ sphn:CopyNumberVariation a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom ucum:cblnbcbr ] ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFeatureLocation ] [ a owl:Restriction ;
- owl:onProperty sphn:hasFeatureLocation ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:GenomicPosition sphn:ChromosomalLocation ) ] ] ) ],
sphn:GenomicVariation ;
owl:equivalentClass so:0001019 ;
skos:definition "structural genomic variant characterized by relative changes in the number of copies of a specific genomic segment compared to a reference sequence" ;
@@ -4306,17 +4296,17 @@ sphn:Discharge a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTargetLocation ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTargetLocation ] [ a owl:Restriction ;
- owl:onProperty sphn:hasTargetLocation ;
- owl:someValuesFrom sphn:Location ] ) ],
+ owl:onProperty sphn:hasDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasTargetLocation ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] ) ],
+ owl:onProperty sphn:hasTargetLocation ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasTargetLocation ;
+ owl:someValuesFrom sphn:Location ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:58000006 ;
skos:definition "discharge of an individual from the healthcare provider institute" .
@@ -4324,12 +4314,6 @@ sphn:Discharge a owl:Class ;
sphn:FollowUp a owl:Class ;
rdfs:label "Follow Up" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
@@ -4337,9 +4321,18 @@ sphn:FollowUp a owl:Class ;
owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
owl:onProperty sphn:hasResult ;
owl:someValuesFrom sphn:VitalStatus ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -4349,12 +4342,9 @@ sphn:FollowUp a owl:Class ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
owl:unionOf ( snomed:386473003 snomed:281036007 ) ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
sphn:SPHNConcept ;
skos:definition "procedure for following up on the patient status" ;
skos:scopeNote "sphn:hasCode no subclasses allowed" .
@@ -4364,17 +4354,17 @@ sphn:Hash a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAlgorithm ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAlgorithm ] [ a owl:Restriction ;
- owl:onProperty sphn:hasAlgorithm ;
- owl:someValuesFrom sphn:Hash_algorithm ] ) ],
+ owl:onProperty sphn:hasStringValue ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAlgorithm ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStringValue ] ) ],
+ owl:onProperty sphn:hasAlgorithm ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAlgorithm ;
+ owl:someValuesFrom sphn:Hash_algorithm ] ) ],
sphn:SPHNConcept ;
skos:definition "irreversible unique number computed on an information entity used to check its validity and integrity" .
@@ -4394,12 +4384,6 @@ sphn:OxygenSaturation a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom ucum:percent ] ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -4408,19 +4392,19 @@ sphn:OxygenSaturation a owl:Class ;
owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
owl:onProperty sphn:hasDataFile ;
owl:someValuesFrom sphn:TimeSeriesDataFile ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] ) ],
sphn:Result ;
owl:equivalentClass snomed:103228002 ;
skos:definition "fraction of oxygen present in the blood" .
sphn:ReferenceInterpretation a owl:Class ;
rdfs:label "Reference Interpretation" ;
- rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] ) ],
- [ a owl:Restriction ;
+ rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
@@ -4431,9 +4415,6 @@ sphn:ReferenceInterpretation a owl:Class ;
owl:onProperty sphn:hasInput ] [ a owl:Restriction ;
owl:onProperty sphn:hasInput ;
owl:someValuesFrom sphn:Result ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStandardGuideline ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -4442,6 +4423,15 @@ sphn:ReferenceInterpretation a owl:Class ;
owl:onProperty sphn:hasOutput ] [ a owl:Restriction ;
owl:onProperty sphn:hasOutput ;
owl:someValuesFrom sphn:ReferenceInterpretationResult ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStandardGuideline ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] ) ],
sphn:Interpretation ;
skos:definition "process of making sense of a quantitative result to derive meaningful conclusions in comparison to a reference" ;
skos:scopeNote "For sphn:hasInput, instances of sphn:TumorGradeAssessmentResult, sphn:TumorStageAssessmentResult, sphn:VitalStatus are not allowed" .
@@ -4453,15 +4443,15 @@ sphn:SemanticMapping_purpose a owl:Class ;
sphn:SourceData a owl:Class ;
rdfs:label "Source Data" ;
- rdfs:subClassOf [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
+ rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStringValue ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -4474,12 +4464,6 @@ sphn:SourceData a owl:Class ;
sphn:SourceSystem a owl:Class ;
rdfs:label "Source System" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasName ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasName ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasPrimarySystem ] [ a owl:Restriction ;
@@ -4490,11 +4474,9 @@ sphn:SourceSystem a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPurpose ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasName ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPurpose ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPurpose ;
- owl:someValuesFrom sphn:SourceSystem_purpose ] ) ],
+ owl:onProperty sphn:hasName ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -4503,6 +4485,14 @@ sphn:SourceSystem a owl:Class ;
owl:onProperty sphn:hasCategory ] [ a owl:Restriction ;
owl:onProperty sphn:hasCategory ;
owl:someValuesFrom sphn:SourceSystem_category ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasPurpose ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasPurpose ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPurpose ;
+ owl:someValuesFrom sphn:SourceSystem_purpose ] ) ],
sphn:SPHNConcept ;
skos:definition "electronic system the data has been retrieved from" .
@@ -4521,7 +4511,7 @@ sphn:TimePattern a owl:Class ;
owl:onProperty sphn:hasTypeCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasTypeCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:385432009 snomed:255238004 snomed:7087005 ) ] ] ) ],
+ owl:unionOf ( snomed:385432009 snomed:7087005 snomed:255238004 ) ] ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:272103003 ;
skos:definition "type of time period during which a treatment was given or an assessment was performed; this can be single time points or a continuous event" ;
@@ -4532,11 +4522,11 @@ sphn:Transcript a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasProtein ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasProtein ] [ a owl:Restriction ;
- owl:onProperty sphn:hasProtein ;
- owl:someValuesFrom sphn:Protein ] ) ],
+ owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasOrganism ;
+ owl:someValuesFrom sphn:Organism ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -4546,11 +4536,11 @@ sphn:Transcript a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasProtein ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
- owl:onProperty sphn:hasOrganism ;
- owl:someValuesFrom sphn:Organism ] ) ],
+ owl:onProperty sphn:hasProtein ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasProtein ;
+ owl:someValuesFrom sphn:Protein ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass so:0000673 ;
skos:definition "RNA molecules that are made from a DNA template" ;
@@ -4559,6 +4549,14 @@ sphn:Transcript a owl:Class ;
sphn:TumorGradeAssessmentResult a owl:Class ;
rdfs:label "Tumor Grade Assessment Result" ;
rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasQuantity ;
+ owl:someValuesFrom sphn:Quantity ] ) ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
@@ -4572,28 +4570,12 @@ sphn:TumorGradeAssessmentResult a owl:Class ;
owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStringValue ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasQuantity ;
- owl:someValuesFrom sphn:Quantity ] ) ],
sphn:AssessmentResult ;
skos:definition "outcome of a tumor grade assessment" .
sphn:TumorStageAssessmentResult a owl:Class ;
rdfs:label "Tumor Stage Assessment Result" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom snomed:138875005 ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
@@ -4607,6 +4589,14 @@ sphn:TumorStageAssessmentResult a owl:Class ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
owl:onProperty sphn:hasQuantity ;
owl:someValuesFrom sphn:Quantity ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom snomed:138875005 ] ) ],
sphn:AssessmentResult ;
skos:definition "outcome of a tumor stage assessment" .
@@ -4630,14 +4620,6 @@ sphn:hasRouteCode a owl:ObjectProperty ;
sphn:AccessDevice a owl:Class ;
rdfs:label "Access Device" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTypeCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTypeCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasTypeCode ;
- owl:someValuesFrom snomed:105789008 ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSoftware ] [ a owl:Restriction ;
@@ -4649,6 +4631,14 @@ sphn:AccessDevice a owl:Class ;
owl:onProperty sphn:hasProductCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasProductCode ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasTypeCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasTypeCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasTypeCode ;
+ owl:someValuesFrom snomed:105789008 ] ) ],
sphn:MedicalDevice ;
owl:equivalentClass snomed:105789008 ;
skos:definition "product intended for medical use to gain access to the body, such as cannula, tube, catheter or drainage" .
@@ -4661,21 +4651,6 @@ sphn:AdverseEvent_outcome a owl:Class ;
sphn:BodyMassIndex a owl:Class ;
rdfs:label "Body Mass Index" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDeterminationDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDeterminationDateTime ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
@@ -4689,17 +4664,32 @@ sphn:BodyMassIndex a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom ucum:kgperm2 ] ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- sphn:SPHNConcept ;
- owl:equivalentClass snomed:60621009,
- loinc:39156-5 ;
- skos:definition "body weight in kilograms divided by the square of the body height in meters" .
-
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDeterminationDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDeterminationDateTime ] ) ],
+ sphn:SPHNConcept ;
+ owl:equivalentClass snomed:60621009,
+ loinc:39156-5 ;
+ skos:definition "body weight in kilograms divided by the square of the body height in meters" .
+
sphn:Comparator a owl:Class ;
rdfs:label "Comparator" ;
rdfs:subClassOf sphn:ValueSet ;
@@ -4729,7 +4719,7 @@ sphn:DataDetermination a owl:Class ;
owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasMethodCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:414135002 snomed:258090004 snomed:87982008 snomed:258104002 snomed:263760002 ) ] ] ) ],
+ owl:unionOf ( snomed:87982008 snomed:258104002 snomed:414135002 snomed:258090004 snomed:263760002 ) ] ] ) ],
sphn:SPHNConcept ;
skos:definition "describes how the data was determined, e.g. measured, calculated" ;
skos:scopeNote "sphn:hasMethodCode no subclasses allowed" .
@@ -4742,12 +4732,6 @@ sphn:DataFile_encoding a owl:Class ;
sphn:DeathDate a owl:Class ;
rdfs:label "Death Date" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasYear ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasYear ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasDay ] [ a owl:Restriction ;
@@ -4765,6 +4749,12 @@ sphn:DeathDate a owl:Class ;
owl:onProperty sphn:hasTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasYear ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasYear ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:399753006,
loinc:81954-0 ;
@@ -4779,11 +4769,9 @@ sphn:DrugArticle a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasName ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom sphn:Code ] ) ],
+ owl:onProperty sphn:hasName ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -4795,23 +4783,18 @@ sphn:DrugArticle a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasName ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasName ] ) ],
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom sphn:Code ] ) ],
sphn:SPHNConcept ;
skos:definition "general details identifying a medication on the level of its commercial article" ;
skos:note "sphn:hasCode allowed coding system: GTIN" .
sphn:ExcludedDisorder a owl:Class ;
rdfs:label "Excluded Disorder" ;
- rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:Terminology sphn:Code ) ] ] ) ],
- [ a owl:Restriction ;
+ rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
@@ -4820,18 +4803,25 @@ sphn:ExcludedDisorder a owl:Class ;
owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasRecordDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( sphn:Terminology icd-o-3:TopographyGroup sphn:Code icd-o-3:MorphologicalGroup ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:315215002 ;
skos:definition "determination of the absence of a disease" ;
@@ -4845,6 +4835,15 @@ sphn:GestationalAgeAtBirth a owl:Class ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -4859,15 +4858,6 @@ sphn:GestationalAgeAtBirth a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom ucum:d ] ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:412726003,
loinc:76516-4 ;
@@ -4876,12 +4866,6 @@ sphn:GestationalAgeAtBirth a owl:Class ;
sphn:Implant a owl:Class ;
rdfs:label "Implant" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSoftware ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSoftware ;
- owl:someValuesFrom sphn:Software ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasTypeCode ] [ a owl:Restriction ;
@@ -4896,35 +4880,41 @@ sphn:Implant a owl:Class ;
owl:onProperty sphn:hasProductCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasProductCode ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSoftware ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSoftware ;
+ owl:someValuesFrom sphn:Software ] ) ],
sphn:MedicalDevice ;
skos:definition "implanted medical device, includes, e.g., heart valve prostheses or joint prostheses" .
sphn:Interpretation a owl:Class ;
rdfs:label "Interpretation" ;
- rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] ) ],
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasOutput ] [ a owl:Restriction ;
owl:onProperty sphn:hasOutput ;
owl:someValuesFrom sphn:SPHNConcept ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStandardGuideline ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasInput ] [ a owl:Restriction ;
owl:onProperty sphn:hasInput ;
owl:someValuesFrom sphn:SPHNConcept ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStandardGuideline ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
sphn:SPHNConcept ;
skos:definition "process of making sense of an outcome to derive meaningful conclusions" .
@@ -4933,12 +4923,17 @@ sphn:MicrobiologyBiomoleculePresenceResult a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:373068000 snomed:10828004 snomed:260385009 ) ] ] ) ],
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasQuantity ;
+ owl:someValuesFrom sphn:Quantity ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStringValue ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -4951,17 +4946,12 @@ sphn:MicrobiologyBiomoleculePresenceResult a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStringValue ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasQuantity ;
- owl:someValuesFrom sphn:Quantity ] ) ],
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:373068000 snomed:260385009 snomed:10828004 ) ] ] ) ],
sphn:LabResult ;
skos:definition "result of microbiology biomolecule presence test for a specific isolate analyzed" ;
skos:scopeNote "sphn:hasCode no subclasses allowed" .
@@ -4976,6 +4966,14 @@ sphn:MicroorganismIdentificationLabTest a owl:Class ;
owl:onProperty sphn:hasInstrument ] [ a owl:Restriction ;
owl:onProperty sphn:hasInstrument ;
owl:someValuesFrom sphn:LabAnalyzer ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom snomed:19851009 ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -4990,33 +4988,9 @@ sphn:MicroorganismIdentificationLabTest a owl:Class ;
owl:onProperty sphn:hasTestKit ] [ a owl:Restriction ;
owl:onProperty sphn:hasTestKit ;
owl:someValuesFrom sphn:LabAnalyzer ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom snomed:19851009 ] ) ],
sphn:LabTest ;
skos:definition "specific lab test performed on a sample for identifying microorganism(s)" .
-sphn:Organism a owl:Class ;
- rdfs:label "Organism" ;
- rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:410607006 sphn:Code ) ] ] ) ],
- sphn:SPHNConcept ;
- owl:equivalentClass snomed:410607006 ;
- skos:definition "living system capable of replicating or reproducing, growth and maintenance. An organism may be unicellular or multicellular" ;
- skos:note "sphn:hasCode allowed coding system: SNOMED CT, NCBI Taxon" .
-
sphn:RespiratoryRate a owl:Class ;
rdfs:label "Respiratory Rate" ;
rdfs:subClassOf [ a owl:Class ;
@@ -5045,7 +5019,7 @@ sphn:RespiratoryRate a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasMethodCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:258104002 snomed:87982008 snomed:258090004 snomed:263760002 ) ] ] ] ) ],
+ owl:unionOf ( snomed:87982008 snomed:258090004 snomed:258104002 snomed:263760002 ) ] ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -5070,9 +5044,12 @@ sphn:ResuscitationDirective a owl:Class ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -5081,12 +5058,9 @@ sphn:ResuscitationDirective a owl:Class ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom snomed:365870005 ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:304251008 ;
skos:definition "decision about the extent of resuscitation interventions appropriate for a specific individual" .
@@ -5129,18 +5103,11 @@ sphn:TumorGradeAssessmentEvent a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ;
+ owl:someValuesFrom sphn:Performer ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -5152,17 +5119,24 @@ sphn:TumorGradeAssessmentEvent a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPerformer ;
- owl:someValuesFrom sphn:Performer ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
sphn:AssessmentEvent ;
skos:definition "evaluation of the tumor grade at a given time, which takes into account a predefined grading system" ;
sphn:replaces sphn-deprecated:TumorGrade .
@@ -5170,12 +5144,6 @@ sphn:TumorGradeAssessmentEvent a owl:Class ;
sphn:TumorStageAssessmentEvent a owl:Class ;
rdfs:label "Tumor Stage Assessment Event" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
@@ -5192,12 +5160,6 @@ sphn:TumorStageAssessmentEvent a owl:Class ;
owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
owl:onProperty sphn:hasPerformer ;
owl:someValuesFrom sphn:Performer ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -5206,6 +5168,18 @@ sphn:TumorStageAssessmentEvent a owl:Class ;
owl:onProperty sphn:hasAssessment ] [ a owl:Restriction ;
owl:onProperty sphn:hasAssessment ;
owl:someValuesFrom sphn:TumorStageAssessment ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] ) ],
sphn:AssessmentEvent ;
skos:definition "evaluation of the tumor stage at a given time, which takes into account a predefined staging system" ;
sphn:replaces sphn-deprecated:TumorStage .
@@ -5465,10 +5439,12 @@ sphn:AdministrativeCase a owl:Class ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ] ) ],
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdmission ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdmission ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdmission ;
+ owl:someValuesFrom sphn:Admission ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -5479,12 +5455,10 @@ sphn:AdministrativeCase a owl:Class ;
owl:someValuesFrom sphn:CareHandling ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdmission ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdmission ] [ a owl:Restriction ;
- owl:onProperty sphn:hasAdmission ;
- owl:someValuesFrom sphn:Admission ] ) ],
+ owl:onProperty sphn:hasIdentifier ] ) ],
sphn:SPHNConcept ;
skos:definition "administrative artifact for billing according to national healthcare billing guidelines, e.g. Swiss Diagnosis Related Groups, and local settings" .
@@ -5492,12 +5466,13 @@ sphn:AntimicrobialSusceptibilityLabTest a owl:Class ;
rdfs:label "Antimicrobial Susceptibility Lab Test" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasInstrument ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasChemicalAgent ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasInstrument ] [ a owl:Restriction ;
- owl:onProperty sphn:hasInstrument ;
- owl:someValuesFrom sphn:LabAnalyzer ] ) ],
+ owl:onProperty sphn:hasChemicalAgent ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasChemicalAgent ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( sphn:Substance sphn:Drug ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -5509,26 +5484,25 @@ sphn:AntimicrobialSusceptibilityLabTest a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
- owl:onProperty sphn:hasResult ;
- owl:someValuesFrom sphn:AntimicrobialSusceptibilityResult ] ) ],
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom snomed:14788002 ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasChemicalAgent ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasInstrument ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasChemicalAgent ] [ a owl:Restriction ;
- owl:onProperty sphn:hasChemicalAgent ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:Substance sphn:Drug ) ] ] ) ],
+ owl:onProperty sphn:hasInstrument ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasInstrument ;
+ owl:someValuesFrom sphn:LabAnalyzer ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom snomed:14788002 ] ) ],
+ owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasResult ;
+ owl:someValuesFrom sphn:AntimicrobialSusceptibilityResult ] ) ],
sphn:LabTest ;
skos:definition "specific lab test performed on an isolate against a chemical agent for determining antimicrobial susceptibility" .
@@ -5536,21 +5510,10 @@ sphn:AntimicrobialSusceptibilityLabTestEvent a owl:Class ;
rdfs:label "Antimicrobial Susceptibility Lab Test Event" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasLabTest ] [ a owl:Restriction ;
- owl:onProperty sphn:hasLabTest ;
- owl:someValuesFrom sphn:AntimicrobialSusceptibilityLabTest ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSample ;
- owl:someValuesFrom sphn:Isolate ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -5559,10 +5522,12 @@ sphn:AntimicrobialSusceptibilityLabTestEvent a owl:Class ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasReportDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasReportDateTime ] ) ],
+ owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSample ;
+ owl:someValuesFrom sphn:Isolate ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -5572,15 +5537,38 @@ sphn:AntimicrobialSusceptibilityLabTestEvent a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasReportDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] ) ],
+ owl:onProperty sphn:hasReportDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasLabTest ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasLabTest ;
+ owl:someValuesFrom sphn:AntimicrobialSusceptibilityLabTest ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
sphn:LabTestEvent ;
skos:definition "occurrence in which one or multiple laboratory tests are performed on an isolate at a given time for determining antimicrobial susceptibility" .
sphn:AntimicrobialSusceptibilityResult a owl:Class ;
rdfs:label "Antimicrobial Susceptibility Result" ;
rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStringValue ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom snomed:1306540001 ] ) ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStandardGuideline ] [ a owl:Restriction ;
@@ -5595,14 +5583,6 @@ sphn:AntimicrobialSusceptibilityResult a owl:Class ;
owl:onProperty sphn:hasNumericalReference ;
owl:someValuesFrom [ a owl:Class ;
owl:unionOf ( sphn:ReferenceValue sphn:ReferenceRange ) ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom snomed:1306540001 ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -5611,12 +5591,6 @@ sphn:AntimicrobialSusceptibilityResult a owl:Class ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
owl:onProperty sphn:hasQuantity ;
owl:someValuesFrom sphn:Quantity ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStringValue ] ) ],
sphn:LabResult ;
skos:definition "result of a antimicrobial susceptibility lab analysis" .
@@ -5625,11 +5599,9 @@ sphn:Biobanksample a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasBiobankName ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSample ;
- owl:someValuesFrom sphn:Sample ] ) ],
+ owl:onProperty sphn:hasBiobankName ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -5639,24 +5611,26 @@ sphn:Biobanksample a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBiobankName ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBiobankName ] ) ],
+ owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSample ;
+ owl:someValuesFrom sphn:Sample ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasIdentifier ] ) ],
sphn:SPHNConcept ;
skos:definition "biosample stored in a biobank" .
@@ -5665,35 +5639,35 @@ sphn:BirthDate a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasComparator ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTime ] ) ],
+ owl:onProperty sphn:hasComparator ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasComparator ;
+ owl:someValuesFrom sphn:Comparator ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasYear ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasYear ] ) ],
+ owl:onProperty sphn:hasTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDay ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMonth ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDay ] ) ],
+ owl:onProperty sphn:hasMonth ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasComparator ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasYear ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasComparator ] [ a owl:Restriction ;
- owl:onProperty sphn:hasComparator ;
- owl:someValuesFrom sphn:Comparator ] ) ],
+ owl:onProperty sphn:hasYear ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMonth ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDay ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMonth ] ) ],
+ owl:onProperty sphn:hasDay ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:184099003,
loinc:21112-8 ;
@@ -5703,20 +5677,17 @@ sphn:BirthDate a owl:Class ;
sphn:BodyPosition a owl:Class ;
rdfs:label "Body Position" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -5725,31 +5696,28 @@ sphn:BodyPosition a owl:Class ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom snomed:9851009 ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:397155001 ;
skos:definition "position of the body during a certain time interval, examination or therapy" .
sphn:BodySurfaceArea a owl:Class ;
rdfs:label "Body Surface Area" ;
- rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDeterminationDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDeterminationDateTime ] ) ],
- [ a owl:Restriction ;
+ rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
@@ -5786,6 +5754,12 @@ sphn:BodySurfaceArea a owl:Class ;
owl:onProperty sphn:hasCalculationMethod ] [ a owl:Restriction ;
owl:onProperty sphn:hasCalculationMethod ;
owl:someValuesFrom sphn:BodySurfaceArea_calculationMethod ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDeterminationDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDeterminationDateTime ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:301898006,
loinc:8277-6 ;
@@ -5794,14 +5768,6 @@ sphn:BodySurfaceArea a owl:Class ;
sphn:DataProvider a owl:Class ;
rdfs:label "Data Provider" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDepartment ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDepartment ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDepartment ;
- owl:someValuesFrom sphn:Department ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasInstitutionCode ] [ a owl:Restriction ;
@@ -5817,6 +5783,14 @@ sphn:DataProvider a owl:Class ;
owl:onProperty sphn:hasCategory ] [ a owl:Restriction ;
owl:onProperty sphn:hasCategory ;
owl:someValuesFrom sphn:DataProvider_category ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDepartment ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDepartment ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDepartment ;
+ owl:someValuesFrom sphn:Department ] ) ],
sphn:SPHNConcept ;
skos:definition "organization that prepares and delivers data" ;
skos:note "sphn:hasInstitutionCode allowed coding system: UID" ;
@@ -5825,23 +5799,6 @@ sphn:DataProvider a owl:Class ;
sphn:HeartRate a owl:Class ;
rdfs:label "Heart Rate" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRegularityCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRegularityCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasRegularityCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:271636001 snomed:61086009 ) ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasQuantity ;
- owl:someValuesFrom sphn:Quantity ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
@@ -5855,15 +5812,44 @@ sphn:HeartRate a owl:Class ;
owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
owl:onProperty sphn:hasDataFile ;
owl:someValuesFrom sphn:TimeSeriesDataFile ] ) ],
- sphn:Result ;
- owl:equivalentClass snomed:364075005,
- loinc:8867-4 ;
- skos:definition "frequency of the heart beats, i.e. the number of time a heart beats per unit of time" ;
- skos:scopeNote "sphn:hasRegularityCode no subclasses allowed" .
-
-sphn:HomeAddress a owl:Class ;
- rdfs:label "Home Address" ;
- rdfs:subClassOf [ a owl:Class ;
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasQuantity ;
+ owl:someValuesFrom sphn:Quantity ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRegularityCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRegularityCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRegularityCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:271636001 snomed:61086009 ) ] ] ) ],
+ sphn:Result ;
+ owl:equivalentClass snomed:364075005,
+ loinc:8867-4 ;
+ skos:definition "frequency of the heart beats, i.e. the number of time a heart beats per unit of time" ;
+ skos:scopeNote "sphn:hasRegularityCode no subclasses allowed" .
+
+sphn:HomeAddress a owl:Class ;
+ rdfs:label "Home Address" ;
+ rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSwissSocioEconomicPosition ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSwissSocioEconomicPosition ;
+ owl:someValuesFrom sphn:SwissSocioEconomicPosition ] ) ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
@@ -5886,18 +5872,6 @@ sphn:HomeAddress a owl:Class ;
owl:onProperty sphn:hasCountry ] [ a owl:Restriction ;
owl:onProperty sphn:hasCountry ;
owl:someValuesFrom sphn:Country ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSwissSocioEconomicPosition ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSwissSocioEconomicPosition ;
- owl:someValuesFrom sphn:SwissSocioEconomicPosition ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:397635003 ;
skos:definition "permanent place of residence of an individual" ;
@@ -5905,7 +5879,13 @@ sphn:HomeAddress a owl:Class ;
sphn:InsuranceStatus a owl:Class ;
rdfs:label "Insurance Status" ;
- rdfs:subClassOf [ a owl:Restriction ;
+ rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] ) ],
+ [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
@@ -5918,28 +5898,22 @@ sphn:InsuranceStatus a owl:Class ;
owl:someValuesFrom sphn:InsuranceStatus_coverageType ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasEndDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass loinc:87520-3 ;
skos:definition "status of the patient's medical insurance" .
@@ -5960,14 +5934,6 @@ sphn:MicrobiologyBiomoleculePresenceLabTest a owl:Class ;
owl:onProperty sphn:hasTargetMolecule ;
owl:someValuesFrom [ a owl:Class ;
owl:unionOf ( sphn:Gene sphn:Protein ) ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTestKit ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTestKit ] [ a owl:Restriction ;
- owl:onProperty sphn:hasTestKit ;
- owl:someValuesFrom sphn:LabAnalyzer ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -5985,6 +5951,14 @@ sphn:MicrobiologyBiomoleculePresenceLabTest a owl:Class ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
owl:unionOf ( snomed:138875005 sphn-loinc:LOINC ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasTestKit ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasTestKit ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasTestKit ;
+ owl:someValuesFrom sphn:LabAnalyzer ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -5999,9 +5973,15 @@ sphn:MicrobiologyBiomoleculePresenceLabTestEvent a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasReportDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasReportDateTime ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -6010,10 +5990,10 @@ sphn:MicrobiologyBiomoleculePresenceLabTestEvent a owl:Class ;
owl:onProperty sphn:hasDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasLabTest ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasLabTest ;
+ owl:someValuesFrom sphn:MicrobiologyBiomoleculePresenceLabTest ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -6022,21 +6002,15 @@ sphn:MicrobiologyBiomoleculePresenceLabTestEvent a owl:Class ;
owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
owl:onProperty sphn:hasSample ;
owl:someValuesFrom sphn:Isolate ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasLabTest ] [ a owl:Restriction ;
- owl:onProperty sphn:hasLabTest ;
- owl:someValuesFrom sphn:MicrobiologyBiomoleculePresenceLabTest ] ) ],
[ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasReportDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasReportDateTime ] ) ],
sphn:LabTestEvent ;
skos:definition "occurrence in which one or multiple laboratory tests are performed on an isolate at a given time to detect the presence of a biomolecule" .
@@ -6044,12 +6018,12 @@ sphn:MicrobiologyMicroscopyLabTest a owl:Class ;
rdfs:label "Microbiology Microscopy Lab Test" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasInstrument ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom snomed:117259009 ] ) ],
+ owl:onProperty sphn:hasInstrument ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasInstrument ;
+ owl:someValuesFrom sphn:LabAnalyzer ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -6074,12 +6048,12 @@ sphn:MicrobiologyMicroscopyLabTest a owl:Class ;
owl:someValuesFrom sphn:MicrobiologyMicroscopyResult ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasInstrument ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasInstrument ] [ a owl:Restriction ;
- owl:onProperty sphn:hasInstrument ;
- owl:someValuesFrom sphn:LabAnalyzer ] ) ],
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom snomed:117259009 ] ) ],
sphn:LabTest ;
skos:definition "specific microbiology microscopy lab test performed on a sample" .
@@ -6090,24 +6064,16 @@ sphn:MicrobiologyMicroscopyLabTestEvent a owl:Class ;
owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasLabTest ] [ a owl:Restriction ;
- owl:onProperty sphn:hasLabTest ;
- owl:someValuesFrom sphn:MicrobiologyMicroscopyLabTest ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSample ;
- owl:someValuesFrom sphn:Sample ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasReportDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:onProperty sphn:hasReportDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -6116,16 +6082,24 @@ sphn:MicrobiologyMicroscopyLabTestEvent a owl:Class ;
owl:onProperty sphn:hasDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasReportDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasReportDateTime ] ) ],
+ owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSample ;
+ owl:someValuesFrom sphn:Sample ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasLabTest ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasLabTest ;
+ owl:someValuesFrom sphn:MicrobiologyMicroscopyLabTest ] ) ],
sphn:LabTestEvent ;
skos:definition "occurrence in which one or multiple microbiology microscopy laboratory tests are performed on a sample at a given time" ;
skos:scopeNote "For sphn:hasSample, instances of sphn:TumorSpecimen are not allowed" .
@@ -6134,10 +6108,19 @@ sphn:MicroorganismIdentificationLabTestEvent a owl:Class ;
rdfs:label "Microorganism Identification Lab Test Event" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasLabTest ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasLabTest ;
+ owl:someValuesFrom sphn:MicroorganismIdentificationLabTest ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -6154,25 +6137,16 @@ sphn:MicroorganismIdentificationLabTestEvent a owl:Class ;
owl:onProperty sphn:hasReportDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasLabTest ] [ a owl:Restriction ;
- owl:onProperty sphn:hasLabTest ;
- owl:someValuesFrom sphn:MicroorganismIdentificationLabTest ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
sphn:LabTestEvent ;
skos:definition "occurrence in which one or multiple laboratory tests are performed on a sample at a given time for identifying microorganism(s)" ;
skos:scopeNote "For sphn:hasSample, instances of sphn:TumorSpecimen are not allowed" .
@@ -6185,17 +6159,6 @@ sphn:Nationality a owl:Class ;
owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasRecordDateTime ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAssociatedCountry ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAssociatedCountry ] [ a owl:Restriction ;
- owl:onProperty sphn:hasAssociatedCountry ;
- owl:someValuesFrom sphn:Country ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -6205,6 +6168,17 @@ sphn:Nationality a owl:Class ;
owl:onProperty sphn:hasAcquistionCode ;
owl:someValuesFrom [ a owl:Class ;
owl:unionOf ( snomed:255396000 snomed:19535007 ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAssociatedCountry ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAssociatedCountry ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAssociatedCountry ;
+ owl:someValuesFrom sphn:Country ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -6218,18 +6192,21 @@ sphn:Nationality a owl:Class ;
sphn:NursingDiagnosis a owl:Class ;
rdfs:label "Nursing Diagnosis" ;
- rdfs:subClassOf [ a owl:Class ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRecordDateTime ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:onProperty sphn:hasRecordDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -6238,15 +6215,12 @@ sphn:NursingDiagnosis a owl:Class ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom sphn:Code ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -6259,22 +6233,38 @@ sphn:NursingDiagnosis a owl:Class ;
skos:definition "clinical judgment concerning a human response to health conditions/life processes, or a vulnerability for that response, by an individual, family, group or community; a nursing diagnosis provides the basis for selection of nursing interventions to achieve outcomes for which the nurse has accountability" ;
skos:note "sphn:hasCode allowed coding system: NANDA" .
-sphn:Protein a owl:Class ;
- rdfs:label "Protein" ;
+sphn:Organism a owl:Class ;
+ rdfs:label "Organism" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
- owl:onProperty sphn:hasOrganism ;
- owl:someValuesFrom sphn:Organism ] ) ],
- [ a owl:Class ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( sphn:Code snomed:410607006 ) ] ] ) ],
+ sphn:SPHNConcept ;
+ owl:equivalentClass snomed:410607006 ;
+ skos:definition "living system capable of replicating or reproducing, growth and maintenance. An organism may be unicellular or multicellular" ;
+ skos:note "sphn:hasCode allowed coding system: SNOMED CT, NCBI Taxon" .
+
+sphn:Protein a owl:Class ;
+ rdfs:label "Protein" ;
+ rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasOrganism ;
+ owl:someValuesFrom sphn:Organism ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass so:0000104,
snomed:88878007 ;
@@ -6297,20 +6287,11 @@ sphn:ReferenceValue a owl:Class ;
sphn:SemanticMapping a owl:Class ;
rdfs:label "Semantic Mapping" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasOutputCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasOutputCode ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -6319,12 +6300,9 @@ sphn:SemanticMapping a owl:Class ;
owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasMethodCode ;
owl:someValuesFrom eco:0000217 ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceData ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSourceData ;
- owl:someValuesFrom sphn:SourceData ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -6333,6 +6311,18 @@ sphn:SemanticMapping a owl:Class ;
owl:onProperty sphn:hasPurpose ] [ a owl:Restriction ;
owl:onProperty sphn:hasPurpose ;
owl:someValuesFrom sphn:SemanticMapping_purpose ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceData ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSourceData ;
+ owl:someValuesFrom sphn:SourceData ] ) ],
sphn:SPHNConcept ;
skos:definition "process of transforming data elements to a code" .
@@ -6341,17 +6331,17 @@ sphn:TumorGradeAssessment a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasComponent ] [ a owl:Restriction ;
- owl:onProperty sphn:hasComponent ;
- owl:someValuesFrom sphn:AssessmentComponent ] ) ],
+ owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRange ;
+ owl:someValuesFrom sphn:Range ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasName ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom snomed:277457005 ] ) ],
+ owl:onProperty sphn:hasName ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -6363,17 +6353,17 @@ sphn:TumorGradeAssessment a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
- owl:onProperty sphn:hasRange ;
- owl:someValuesFrom sphn:Range ] ) ],
+ owl:onProperty sphn:hasComponent ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasComponent ;
+ owl:someValuesFrom sphn:AssessmentComponent ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasName ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasName ] ) ],
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom snomed:277457005 ] ) ],
sphn:Assessment ;
owl:equivalentClass snomed:277457005,
loinc:21858-6 ;
@@ -6386,19 +6376,17 @@ sphn:TumorStageAssessment a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
- owl:onProperty sphn:hasRange ;
- owl:someValuesFrom sphn:Range ] ) ],
+ owl:onProperty sphn:hasComponent ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasComponent ;
+ owl:someValuesFrom sphn:AssessmentComponent ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
- owl:onProperty sphn:hasResult ;
- owl:someValuesFrom sphn:TumorStageAssessmentResult ] ) ],
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom snomed:254292007 ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -6408,17 +6396,19 @@ sphn:TumorStageAssessment a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasComponent ] [ a owl:Restriction ;
- owl:onProperty sphn:hasComponent ;
- owl:someValuesFrom sphn:AssessmentComponent ] ) ],
+ owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasResult ;
+ owl:someValuesFrom sphn:TumorStageAssessmentResult ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom snomed:254292007 ] ) ],
+ owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRange ;
+ owl:someValuesFrom sphn:Range ] ) ],
sphn:Assessment ;
owl:equivalentClass snomed:254292007 ;
skos:definition "staging system used to assess the spread of the oncology disease" ;
@@ -6443,18 +6433,11 @@ sphn:AssessmentComponent a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn-loinc:LOINC snomed:363787002 snomed:71388002 ) ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasName ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasName ] ) ],
+ owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRange ;
+ owl:someValuesFrom sphn:Range ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -6464,34 +6447,35 @@ sphn:AssessmentComponent a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasName ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
- owl:onProperty sphn:hasRange ;
- owl:someValuesFrom sphn:Range ] ) ],
+ owl:onProperty sphn:hasName ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:363787002 snomed:71388002 sphn-loinc:LOINC ) ] ] ) ],
sphn:SPHNConcept ;
skos:definition "component of an assessment" ;
skos:note "sphn:hasCode allowed coding system: SNOMED CT, LOINC" ;
- skos:scopeNote "For sphn:hasRange, instances of sphn:ReferenceRange are not allowed" ;
+ skos:scopeNote "For sphn:hasRange, instances of sphn:ReferenceRange are not allowed",
+ "For sphn:hasResult, instances of sphn:TumorStageAssessmentResult, sphn:TumorGradeAssessmentResult are not allowed" ;
sphn:replaces sphn-deprecated:SimpleScore .
sphn:AssessmentEvent a owl:Class ;
rdfs:label "Assessment Event" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ;
+ owl:someValuesFrom sphn:Performer ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -6500,20 +6484,27 @@ sphn:AssessmentEvent a owl:Class ;
owl:onProperty sphn:hasAssessment ] [ a owl:Restriction ;
owl:onProperty sphn:hasAssessment ;
owl:someValuesFrom sphn:Assessment ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPerformer ;
- owl:someValuesFrom sphn:Performer ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasDateTime ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:386053000 ;
skos:definition "evaluation at a given time, which takes into account a predefined scale, classification, staging or scoring system" ;
@@ -6523,12 +6514,6 @@ sphn:AssessmentEvent a owl:Class ;
sphn:AssessmentResult a owl:Class ;
rdfs:label "Assessment Result" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
@@ -6536,6 +6521,12 @@ sphn:AssessmentResult a owl:Class ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
owl:onProperty sphn:hasQuantity ;
owl:someValuesFrom sphn:Quantity ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -6548,20 +6539,6 @@ sphn:AssessmentResult a owl:Class ;
sphn:BilledDiagnosis a owl:Class ;
rdfs:label "Billed Diagnosis" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectAge ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectAge ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSubjectAge ;
- owl:someValuesFrom sphn:Age ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRecordDateTime ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasRank ] [ a owl:Restriction ;
@@ -6569,29 +6546,43 @@ sphn:BilledDiagnosis a owl:Class ;
owl:onProperty sphn:hasRank ] [ a owl:Restriction ;
owl:onProperty sphn:hasRank ;
owl:someValuesFrom sphn:BilledDiagnosis_rank ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom icd-10-gm:ICD-10-GM ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectAge ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:onProperty sphn:hasSubjectAge ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectAge ;
+ owl:someValuesFrom sphn:Age ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRecordDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom icd-10-gm:ICD-10-GM ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
sphn:Diagnosis ;
owl:equivalentClass snomed:89100005,
loinc:38999-9 ;
@@ -6631,17 +6622,17 @@ sphn:BloodPressure a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDataFile ;
- owl:someValuesFrom sphn:TimeSeriesDataFile ] ) ],
+ owl:onProperty sphn:hasDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] ) ],
+ owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDataFile ;
+ owl:someValuesFrom sphn:TimeSeriesDataFile ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -6664,34 +6655,8 @@ sphn:CardiacIndex a owl:Class ;
rdfs:label "Cardiac Index" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMethodCode ;
- owl:someValuesFrom snomed:63075001 ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDeterminationDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDeterminationDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
owl:onProperty sphn:hasQuantity ;
@@ -6702,22 +6667,42 @@ sphn:CardiacIndex a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom ucum:Lperminperm2 ] ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDeterminationDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDeterminationDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMethodCode ;
+ owl:someValuesFrom snomed:63075001 ] ) ],
[ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:54993008 ;
skos:definition "cardiac output in relation to the body surface area (BSA)" .
sphn:Consent a owl:Class ;
rdfs:label "Consent" ;
- rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Restriction ;
+ rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
@@ -6728,19 +6713,25 @@ sphn:Consent a owl:Class ;
owl:onProperty sphn:hasTypeCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasTypeCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:410529002 snomed:69658003 snomed:60132005 ) ] ] ) ],
+ owl:unionOf ( snomed:410529002 snomed:60132005 snomed:69658003 ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTemplateIdentifier ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTemplateIdentifier ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasTemplateIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasTemplateIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -6749,7 +6740,7 @@ sphn:Consent a owl:Class ;
owl:onProperty sphn:hasStatusCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasStatusCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:443390004 snomed:225795001 snomed:385645004 ) ] ] ) ],
+ owl:unionOf ( snomed:443390004 snomed:385645004 snomed:225795001 ) ] ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:371537001,
loinc:59284-0 ;
@@ -6760,18 +6751,6 @@ sphn:Consent a owl:Class ;
sphn:FluidBalance a owl:Class ;
rdfs:label "Fluid Balance" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFluidInputOutput ] [ a owl:Restriction ;
- owl:onProperty sphn:hasFluidInputOutput ;
- owl:someValuesFrom sphn:FluidInputOutput ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
@@ -6779,76 +6758,42 @@ sphn:FluidBalance a owl:Class ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
owl:onProperty sphn:hasQuantity ;
owl:someValuesFrom sphn:Quantity ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStartDateTime ] ) ],
- sphn:SPHNConcept ;
- owl:equivalentClass snomed:364396009 ;
- skos:definition "difference between fluid input and output during a specified time interval" .
-
-sphn:MicroorganismIdentificationResult a owl:Class ;
- rdfs:label "Microorganism Identification Result" ;
- rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasQuantity ;
- owl:someValuesFrom sphn:Quantity ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTimeToPositivity ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTimeToPositivity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasTimeToPositivity ;
- owl:someValuesFrom sphn:Quantity ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasNumericalReference ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasNumericalReference ] [ a owl:Restriction ;
- owl:onProperty sphn:hasNumericalReference ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:ReferenceValue sphn:ReferenceRange ) ] ] ) ],
+ owl:onProperty sphn:hasFluidInputOutput ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFluidInputOutput ;
+ owl:someValuesFrom sphn:FluidInputOutput ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStringValue ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPresenceCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPresenceCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPresenceCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:2667000 snomed:373068000 snomed:52101004 ) ] ] ) ],
- sphn:LabResult ;
- skos:definition "result of the microorganism identification lab test" ;
- skos:scopeNote "sphn:hasPresenceCode no subclasses allowed" .
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ sphn:SPHNConcept ;
+ owl:equivalentClass snomed:364396009 ;
+ skos:definition "difference between fluid input and output during a specified time interval" .
sphn:QualityControlMetric a owl:Class ;
rdfs:label "Quality Control Metric" ;
@@ -6940,18 +6885,17 @@ sphn:Assessment a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasComponent ] [ a owl:Restriction ;
- owl:onProperty sphn:hasComponent ;
- owl:someValuesFrom sphn:AssessmentComponent ] ) ],
+ owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRange ;
+ owl:someValuesFrom sphn:Range ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn-loinc:LOINC snomed:363787002 snomed:254291000 snomed:71388002 ) ] ] ) ],
+ owl:onProperty sphn:hasComponent ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasComponent ;
+ owl:someValuesFrom sphn:AssessmentComponent ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -6969,16 +6913,18 @@ sphn:Assessment a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRange ] [ a owl:Restriction ;
- owl:onProperty sphn:hasRange ;
- owl:someValuesFrom sphn:Range ] ) ],
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:363787002 snomed:71388002 snomed:254291000 sphn-loinc:LOINC ) ] ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:254291000 ;
skos:definition "assessment scale, classification, staging or scoring system" ;
skos:note "sphn:hasCode allowed coding system: SNOMED CT, LOINC" ;
- skos:scopeNote "For sphn:hasRange, instances of sphn:ReferenceRange are not allowed" ;
+ skos:scopeNote "For sphn:hasRange, instances of sphn:ReferenceRange are not allowed",
+ "For sphn:hasResult, instances of sphn:TumorStageAssessmentResult, sphn:TumorGradeAssessmentResult are not allowed" ;
sphn:replaces sphn-deprecated:SimpleScore .
sphn:FluidInputOutput a owl:Class ;
@@ -6986,21 +6932,30 @@ sphn:FluidInputOutput a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -7013,44 +6968,12 @@ sphn:FluidInputOutput a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom snomed:33463005 ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
sphn:SPHNConcept ;
skos:definition "gain or loss of fluid that impacts the fluid balance" .
sphn:ImagingProcedure a owl:Class ;
rdfs:label "Imaging Procedure" ;
- rdfs:subClassOf [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom snomed:363679005 ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIntent ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIntent ] [ a owl:Restriction ;
- owl:onProperty sphn:hasIntent ;
- owl:someValuesFrom sphn:Intent ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Class ;
+ rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
@@ -7062,18 +6985,41 @@ sphn:ImagingProcedure a owl:Class ;
owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
owl:onProperty sphn:hasBodySite ;
owl:someValuesFrom sphn:BodySite ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStartDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIntent ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasIntent ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIntent ;
+ owl:someValuesFrom sphn:Intent ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom snomed:363679005 ] ) ],
sphn:MedicalProcedure ;
owl:equivalentClass snomed:363679005 ;
skos:definition "imaging procedure used for examination of a body site or function" ;
@@ -7082,6 +7028,12 @@ sphn:ImagingProcedure a owl:Class ;
sphn:ImplantPresence a owl:Class ;
rdfs:label "Implant Presence" ;
rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRecordDateTime ] ) ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
@@ -7095,15 +7047,9 @@ sphn:ImplantPresence a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRecordDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7121,9 +7067,9 @@ sphn:ImplantPresence a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7138,58 +7084,112 @@ sphn:MicrobiologyMicroscopyResult_cellMorphology a owl:Class ;
rdfs:subClassOf sphn:ValueSet ;
skos:definition "cell morphology associated to the concept" .
-sphn:OncologyDiagnosis a owl:Class ;
- rdfs:label "Oncology Diagnosis" ;
- rdfs:subClassOf [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+sphn:MicroorganismIdentificationResult a owl:Class ;
+ rdfs:label "Microorganism Identification Result" ;
+ rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStringValue ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectAge ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasNumericalReference ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectAge ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSubjectAge ;
- owl:someValuesFrom sphn:Age ] ) ],
+ owl:onProperty sphn:hasNumericalReference ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasNumericalReference ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( sphn:ReferenceValue sphn:ReferenceRange ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasTimeToPositivity ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasTimeToPositivity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasTimeToPositivity ;
+ owl:someValuesFrom sphn:Quantity ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasPresenceCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
- owl:onProperty sphn:hasBodySite ;
- owl:someValuesFrom sphn:BodySite ] ) ],
+ owl:onProperty sphn:hasPresenceCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPresenceCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:373068000 snomed:52101004 snomed:2667000 ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasQuantity ;
+ owl:someValuesFrom sphn:Quantity ] ) ],
[ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasOrganism ;
+ owl:someValuesFrom sphn:Organism ] ) ],
+ sphn:LabResult ;
+ skos:definition "result of the microorganism identification lab test" ;
+ skos:scopeNote "sphn:hasPresenceCode no subclasses allowed" .
+
+sphn:OncologyDiagnosis a owl:Class ;
+ rdfs:label "Oncology Diagnosis" ;
+ rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasRecordDateTime ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIncidenceDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIncidenceDateTime ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( icd-10-gm:ICD-10-GM oncotree:TISSUE sphn:Code ) ] ] ) ],
+ owl:unionOf ( icd-10-gm:ICD-10-GM sphn:Code oncotree:TISSUE ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectAge ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectAge ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectAge ;
+ owl:someValuesFrom sphn:Age ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasBodySite ;
+ owl:someValuesFrom sphn:BodySite ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasIncidenceDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasIncidenceDateTime ] ) ],
sphn:Diagnosis ;
owl:equivalentClass snomed:363346000 ;
skos:definition "determination of the presence of an oncological disease, from expressed signs and symptoms and assessments such as biopsy, tumor marker test, imaging, or the like" ;
@@ -7198,36 +7198,42 @@ sphn:OncologyDiagnosis a owl:Class ;
sphn:OncologySurgery a owl:Class ;
rdfs:label "Oncology Surgery" ;
- rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStartDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
owl:onProperty sphn:hasBodySite ;
owl:someValuesFrom sphn:BodySite ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7236,12 +7242,6 @@ sphn:OncologySurgery a owl:Class ;
owl:onProperty sphn:hasIntent ] [ a owl:Restriction ;
owl:onProperty sphn:hasIntent ;
owl:someValuesFrom sphn:Intent ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
sphn:MedicalProcedure ;
skos:definition "invasive intervention performed for, with or on behalf of an individual whose purpose is to improve, maintain or promote health, or functioning conditions in the context of an oncological disease, by the means of partial or complete exeresis of a solid tumor lesion that is the organic substrate of this disease" .
@@ -7249,10 +7249,10 @@ sphn:OrganSupport a owl:Class ;
rdfs:label "Organ Support" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7265,6 +7265,21 @@ sphn:OrganSupport a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom snomed:399707004 ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:108241001 snomed:233573008 snomed:1222606000 snomed:1149092001 snomed:232957001 ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7275,7 +7290,7 @@ sphn:OrganSupport a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:80891009 snomed:10200004 snomed:39607008 snomed:64033007 ) ] ] ] ) ],
+ owl:unionOf ( snomed:80891009 snomed:10200004 snomed:64033007 snomed:39607008 ) ] ] ] ) ],
[ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
@@ -7287,25 +7302,10 @@ sphn:OrganSupport a owl:Class ;
owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:1222606000 snomed:233573008 snomed:1149092001 snomed:232957001 snomed:108241001 ) ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
sphn:MedicalProcedure ;
skos:definition "type and time period when patient was supported by organ support procedures" ;
skos:scopeNote "sphn:hasIntent no subclasses allowed" .
@@ -7315,12 +7315,6 @@ sphn:ProblemCondition a owl:Class ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStringValue ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7330,11 +7324,9 @@ sphn:ProblemCondition a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRelativeTemporalityCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRelativeTemporalityCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasRelativeTemporalityCode ;
- owl:someValuesFrom snomed:307152002 ] ) ],
+ owl:onProperty sphn:hasStringValue ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7353,6 +7345,14 @@ sphn:ProblemCondition a owl:Class ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRelativeTemporalityCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRelativeTemporalityCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRelativeTemporalityCode ;
+ owl:someValuesFrom snomed:307152002 ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7370,18 +7370,18 @@ sphn:Range a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasUpperLimit ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasLowerLimit ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasUpperLimit ] [ a owl:Restriction ;
- owl:onProperty sphn:hasUpperLimit ;
+ owl:onProperty sphn:hasLowerLimit ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasLowerLimit ;
owl:someValuesFrom sphn:Quantity ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasLowerLimit ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasUpperLimit ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasLowerLimit ] [ a owl:Restriction ;
- owl:onProperty sphn:hasLowerLimit ;
+ owl:onProperty sphn:hasUpperLimit ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasUpperLimit ;
owl:someValuesFrom sphn:Quantity ] ) ],
sphn:SPHNConcept ;
skos:definition "interval of values" .
@@ -7391,18 +7391,18 @@ sphn:ReferenceRange a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasLowerLimit ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasUpperLimit ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasLowerLimit ] [ a owl:Restriction ;
- owl:onProperty sphn:hasLowerLimit ;
+ owl:onProperty sphn:hasUpperLimit ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasUpperLimit ;
owl:someValuesFrom sphn:Quantity ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasUpperLimit ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasLowerLimit ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasUpperLimit ] [ a owl:Restriction ;
- owl:onProperty sphn:hasUpperLimit ;
+ owl:onProperty sphn:hasLowerLimit ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasLowerLimit ;
owl:someValuesFrom sphn:Quantity ] ) ],
sphn:Range ;
skos:definition "interval of values that is deemed normal for a physiologic measurement in healthy individuals" .
@@ -7418,20 +7418,9 @@ sphn:TransplantPresence a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTransplant ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTransplant ] [ a owl:Restriction ;
- owl:onProperty sphn:hasTransplant ;
- owl:someValuesFrom sphn:Transplant ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7440,6 +7429,12 @@ sphn:TransplantPresence a owl:Class ;
owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
owl:onProperty sphn:hasBodySite ;
owl:someValuesFrom sphn:BodySite ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7448,16 +7443,21 @@ sphn:TransplantPresence a owl:Class ;
owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasTransplant ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
+ owl:onProperty sphn:hasTransplant ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasTransplant ;
+ owl:someValuesFrom sphn:Transplant ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:737294004 ;
skos:definition "presence of a transplanted organ or tissue such as, e.g., a kidney graft" .
@@ -7498,26 +7498,21 @@ sphn:hasPrimaryContainer a owl:ObjectProperty ;
sphn:AccessDevicePresence a owl:Class ;
rdfs:label "Access Device Presence" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMedicalDevice ;
+ owl:someValuesFrom sphn:AccessDevice ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRestingPoint ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
+ owl:onProperty sphn:hasRestingPoint ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRestingPoint ;
+ owl:someValuesFrom sphn:BodySite ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7526,6 +7521,9 @@ sphn:AccessDevicePresence a owl:Class ;
owl:onProperty sphn:hasInsertionPoint ] [ a owl:Restriction ;
owl:onProperty sphn:hasInsertionPoint ;
owl:someValuesFrom sphn:BodySite ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7535,53 +7533,63 @@ sphn:AccessDevicePresence a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMedicalDevice ;
- owl:someValuesFrom sphn:AccessDevice ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRestingPoint ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRestingPoint ] [ a owl:Restriction ;
- owl:onProperty sphn:hasRestingPoint ;
- owl:someValuesFrom sphn:BodySite ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] ) ],
sphn:SPHNConcept ;
skos:definition "application of medical access device, such as cannula, tube, catheter or drainage" .
sphn:AdverseEvent a owl:Class ;
rdfs:label "Adverse Event" ;
- rdfs:subClassOf [ a owl:Restriction ;
+ rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasOutcome ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasOutcome ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasOutcome ;
+ owl:someValuesFrom sphn:AdverseEvent_outcome ] ) ],
+ [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasOnsetDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:onProperty sphn:hasOnsetDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSeverityCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIntervention ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSeverityCode ] ) ],
+ owl:onProperty sphn:hasIntervention ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOnsetDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOnsetDateTime ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasConsequences ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasConsequences ] [ a owl:Restriction ;
- owl:onProperty sphn:hasConsequences ;
- owl:someValuesFrom sphn:AdverseEvent_consequences ] ) ],
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom sphn:Code ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -7591,25 +7599,17 @@ sphn:AdverseEvent a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOutcome ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasConsequences ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOutcome ] [ a owl:Restriction ;
- owl:onProperty sphn:hasOutcome ;
- owl:someValuesFrom sphn:AdverseEvent_outcome ] ) ],
+ owl:onProperty sphn:hasConsequences ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasConsequences ;
+ owl:someValuesFrom sphn:AdverseEvent_consequences ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIntervention ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIntervention ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSeverityCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom sphn:Code ] ) ],
+ owl:onProperty sphn:hasSeverityCode ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:281647001 ;
skos:definition "results from an intervention that caused unintentional harm" ;
@@ -7619,12 +7619,6 @@ sphn:AdverseEvent a owl:Class ;
sphn:Age a owl:Class ;
rdfs:label "Age" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDeterminationDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDeterminationDateTime ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
@@ -7638,10 +7632,16 @@ sphn:Age a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( ucum:mo ucum:h ucum:min ucum:wk ucum:d ucum:a ) ] ] ] ] ) ],
+ owl:unionOf ( ucum:h ucum:a ucum:d ucum:wk ucum:min ucum:mo ) ] ] ] ] ) ],
[ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDeterminationDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDeterminationDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -7657,20 +7657,6 @@ sphn:Age a owl:Class ;
sphn:BilledProcedure a owl:Class ;
rdfs:label "Billed Procedure" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
- owl:onProperty sphn:hasBodySite ;
- owl:someValuesFrom sphn:BodySite ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasIntent ] [ a owl:Restriction ;
@@ -7678,15 +7664,6 @@ sphn:BilledProcedure a owl:Class ;
owl:onProperty sphn:hasIntent ] [ a owl:Restriction ;
owl:onProperty sphn:hasIntent ;
owl:someValuesFrom sphn:Intent ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -7699,6 +7676,20 @@ sphn:BilledProcedure a owl:Class ;
owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasBodySite ;
+ owl:someValuesFrom sphn:BodySite ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -7707,6 +7698,12 @@ sphn:BilledProcedure a owl:Class ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom chop:CHOP ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7715,16 +7712,16 @@ sphn:BilledProcedure a owl:Class ;
owl:onProperty sphn:hasRank ] [ a owl:Restriction ;
owl:onProperty sphn:hasRank ;
owl:someValuesFrom sphn:BilledProcedure_rank ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
sphn:MedicalProcedure ;
skos:definition "procedure, coded for billing (e.g. for building the Diagnosis Related Groups) according to guidelines of the national authority (e.g. Swiss Federal Office of Public Health), e.g. Z57.34 open biopsy of the urinary bladder" ;
sphn:replaces sphn-deprecated:FOPHProcedure .
sphn:Drug a owl:Class ;
rdfs:label "Drug" ;
- rdfs:subClassOf [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
+ rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
@@ -7732,26 +7729,29 @@ sphn:Drug a owl:Class ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
owl:onProperty sphn:hasQuantity ;
owl:someValuesFrom sphn:Quantity ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasArticle ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasArticle ] [ a owl:Restriction ;
- owl:onProperty sphn:hasArticle ;
- owl:someValuesFrom sphn:DrugArticle ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasActiveIngredient ] [ a owl:Restriction ;
owl:onProperty sphn:hasActiveIngredient ;
owl:someValuesFrom sphn:Substance ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasInactiveIngredient ] [ a owl:Restriction ;
owl:onProperty sphn:hasInactiveIngredient ;
owl:someValuesFrom sphn:Substance ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasArticle ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasArticle ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasArticle ;
+ owl:someValuesFrom sphn:DrugArticle ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:410942007 ;
skos:definition "any substance with the intent to prevent, diagnose, treat, or relieve symptoms of a disease or abnormal condition" .
@@ -7775,23 +7775,15 @@ sphn:LabResult a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStringValue ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasQuantity ;
- owl:someValuesFrom sphn:Quantity ] ) ],
+ owl:onProperty sphn:hasCode ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] ) ],
+ owl:onProperty sphn:hasStringValue ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7801,6 +7793,14 @@ sphn:LabResult a owl:Class ;
owl:onProperty sphn:hasNumericalReference ;
owl:someValuesFrom [ a owl:Class ;
owl:unionOf ( sphn:ReferenceValue sphn:ReferenceRange ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasQuantity ;
+ owl:someValuesFrom sphn:Quantity ] ) ],
sphn:Result ;
skos:definition "outcome, value, or information which gives insight about a laboratory test" .
@@ -7814,14 +7814,6 @@ sphn:LabTest a owl:Class ;
owl:onProperty sphn:hasTestKit ] [ a owl:Restriction ;
owl:onProperty sphn:hasTestKit ;
owl:someValuesFrom sphn:LabAnalyzer ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasInstrument ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasInstrument ] [ a owl:Restriction ;
- owl:onProperty sphn:hasInstrument ;
- owl:someValuesFrom sphn:LabAnalyzer ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -7837,6 +7829,14 @@ sphn:LabTest a owl:Class ;
owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
owl:onProperty sphn:hasResult ;
owl:someValuesFrom sphn:LabResult ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasInstrument ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasInstrument ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasInstrument ;
+ owl:someValuesFrom sphn:LabAnalyzer ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:15220000 ;
skos:definition "specific laboratory test performed to analyze a sample with a given equipment and leading to specific results" ;
@@ -7848,17 +7848,21 @@ sphn:MicrobiologyMicroscopyResult a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCellMorphology ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasNumericalReference ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCellMorphology ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCellMorphology ;
- owl:someValuesFrom sphn:MicrobiologyMicroscopyResult_cellMorphology ] ) ],
+ owl:onProperty sphn:hasNumericalReference ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasNumericalReference ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( sphn:ReferenceValue sphn:ReferenceRange ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStainingResultCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStringValue ] ) ],
+ owl:onProperty sphn:hasStainingResultCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStainingResultCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:260385009 snomed:373068000 snomed:10828004 ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7867,16 +7871,15 @@ sphn:MicrobiologyMicroscopyResult a owl:Class ;
owl:onProperty sphn:hasCellCountEstimateCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCellCountEstimateCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:57176003 snomed:46998006 snomed:260396001 snomed:260413007 ) ] ] ) ],
+ owl:unionOf ( snomed:260396001 snomed:46998006 snomed:57176003 snomed:260413007 ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasNumericalReference ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCellMorphology ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasNumericalReference ] [ a owl:Restriction ;
- owl:onProperty sphn:hasNumericalReference ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:ReferenceValue sphn:ReferenceRange ) ] ] ) ],
+ owl:onProperty sphn:hasCellMorphology ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCellMorphology ;
+ owl:someValuesFrom sphn:MicrobiologyMicroscopyResult_cellMorphology ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7885,15 +7888,6 @@ sphn:MicrobiologyMicroscopyResult a owl:Class ;
owl:onProperty sphn:hasCellOrganization ] [ a owl:Restriction ;
owl:onProperty sphn:hasCellOrganization ;
owl:someValuesFrom sphn:MicrobiologyMicroscopyResult_cellOrganization ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStainingResultCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStainingResultCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasStainingResultCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:373068000 snomed:10828004 snomed:260385009 ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7902,8 +7896,14 @@ sphn:MicrobiologyMicroscopyResult a owl:Class ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
owl:onProperty sphn:hasQuantity ;
owl:someValuesFrom sphn:Quantity ] ) ],
- sphn:LabResult ;
- skos:definition "microscopy analysis results for a specific studied biosample in microbiology" ;
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStringValue ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStringValue ] ) ],
+ sphn:LabResult ;
+ skos:definition "microscopy analysis results for a specific studied biosample in microbiology" ;
skos:scopeNote "sphn:hasCellCountEstimateCode no subclasses allowed",
"sphn:hasStainingResultCode no subclasses allowed" .
@@ -7912,33 +7912,29 @@ sphn:OxygenAdministrationEvent a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFlowRate ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMedicalDevice ;
- owl:someValuesFrom sphn:MedicalDevice ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMedicalDevice ;
+ owl:onProperty sphn:hasFlowRate ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFlowRate ;
+ owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFlowRate ;
owl:someValuesFrom [ a owl:Restriction ;
- owl:onProperty sphn:hasTypeCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:466713001 snomed:720742008 snomed:426854004 ) ] ] ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasUnit ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom ucum:Lpermin ] ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFractionOfInspiredOxygen ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFractionOfInspiredOxygen ] [ a owl:Restriction ;
- owl:onProperty sphn:hasFractionOfInspiredOxygen ;
- owl:someValuesFrom sphn:FractionOfInspiredOxygen ] ) ],
+ owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -7947,24 +7943,34 @@ sphn:OxygenAdministrationEvent a owl:Class ;
owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMedicalDevice ;
+ owl:someValuesFrom sphn:MedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMedicalDevice ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasTypeCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:466713001 snomed:426854004 snomed:720742008 ) ] ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFlowRate ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFractionOfInspiredOxygen ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFlowRate ] [ a owl:Restriction ;
- owl:onProperty sphn:hasFlowRate ;
- owl:someValuesFrom sphn:Quantity ] ) ],
+ owl:onProperty sphn:hasFractionOfInspiredOxygen ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFractionOfInspiredOxygen ;
+ owl:someValuesFrom sphn:FractionOfInspiredOxygen ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
sphn:SPHNConcept ;
skos:definition "process during which oxygen is administered via cannula without supporting pressure" ;
skos:scopeNote "For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:Implant, sphn:LabAnalyzer are not allowed",
@@ -8011,16 +8017,7 @@ sphn:Allergy a owl:Class ;
owl:onProperty sphn:hasVerificationStatusCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasVerificationStatusCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:723511001 snomed:415684004 snomed:723510000 snomed:410605003 ) ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSeverityCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSeverityCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSeverityCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:723507007 snomed:723509005 snomed:723505004 ) ] ] ) ],
+ owl:unionOf ( snomed:723511001 snomed:723510000 snomed:415684004 snomed:410605003 ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8038,9 +8035,15 @@ sphn:Allergy a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFirstRecordDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSeverityCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFirstRecordDateTime ] ) ],
+ owl:onProperty sphn:hasSeverityCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSeverityCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:723507007 snomed:723505004 snomed:723509005 ) ] ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -8055,10 +8058,13 @@ sphn:Allergy a owl:Class ;
owl:onProperty sphn:hasReactionTypeCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasReactionTypeCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:609328004 snomed:782197009 ) ] ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:unionOf ( snomed:782197009 snomed:609328004 ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasFirstRecordDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasFirstRecordDateTime ] ) ],
sphn:SPHNConcept ;
skos:definition "risk of harmful or undesirable, physiological response which is unique to an individual and associated with exposure to an allergen" ;
skos:scopeNote "sphn:hasReactionTypeCode no subclasses allowed",
@@ -8067,7 +8073,10 @@ sphn:Allergy a owl:Class ;
sphn:CardiacOutputMeasurement a owl:Class ;
rdfs:label "Cardiac Output Measurement" ;
- rdfs:subClassOf [ a owl:Class ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
@@ -8079,6 +8088,12 @@ sphn:CardiacOutputMeasurement a owl:Class ;
owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -8088,11 +8103,11 @@ sphn:CardiacOutputMeasurement a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMedicalDevice ;
- owl:someValuesFrom sphn:MedicalDevice ] ) ],
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ;
+ owl:someValuesFrom sphn:Performer ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8104,26 +8119,17 @@ sphn:CardiacOutputMeasurement a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPerformer ;
- owl:someValuesFrom sphn:Performer ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMedicalDevice ;
+ owl:someValuesFrom sphn:MedicalDevice ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStartDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
sphn:Measurement ;
owl:equivalentClass snomed:117610000 ;
skos:definition "measurement of the cardiac output of the individual" ;
@@ -8139,36 +8145,29 @@ sphn:Death a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasConditionCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDate ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasConditionCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasConditionCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( icd-10-gm:ICD-10-GM snomed:64572001 ) ] ] ) ],
+ owl:onProperty sphn:hasDate ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDate ;
+ owl:someValuesFrom sphn:DeathDate ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCircumstanceCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasConditionCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCircumstanceCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCircumstanceCode ;
+ owl:onProperty sphn:hasConditionCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasConditionCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( icd-10-gm:ICD-10-GM snomed:419620001 ) ] ] ) ],
+ owl:unionOf ( icd-10-gm:ICD-10-GM snomed:64572001 ) ] ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasReportDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasReportDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -8178,11 +8177,18 @@ sphn:Death a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDate ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCircumstanceCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDate ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDate ;
- owl:someValuesFrom sphn:DeathDate ] ) ],
+ owl:onProperty sphn:hasCircumstanceCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCircumstanceCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( icd-10-gm:ICD-10-GM snomed:419620001 ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:419620001 ;
skos:definition "cessation of all vital bodily functions" ;
@@ -8192,6 +8198,18 @@ sphn:Death a owl:Class ;
sphn:Gene a owl:Class ;
rdfs:label "Gene" ;
rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasTranscript ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasTranscript ;
+ owl:someValuesFrom sphn:Transcript ] ) ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
@@ -8205,18 +8223,6 @@ sphn:Gene a owl:Class ;
owl:onProperty sphn:hasProtein ] [ a owl:Restriction ;
owl:onProperty sphn:hasProtein ;
owl:someValuesFrom sphn:Protein ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTranscript ] [ a owl:Restriction ;
- owl:onProperty sphn:hasTranscript ;
- owl:someValuesFrom sphn:Transcript ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass so:0000704,
snomed:67271001 ;
@@ -8227,16 +8233,31 @@ sphn:LabTestEvent a owl:Class ;
rdfs:label "Lab Test Event" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDateTime ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasReportDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasReportDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasLabTest ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasLabTest ;
+ owl:someValuesFrom sphn:LabTest ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8245,27 +8266,12 @@ sphn:LabTestEvent a owl:Class ;
owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
owl:onProperty sphn:hasSample ;
owl:someValuesFrom sphn:Sample ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasLabTest ] [ a owl:Restriction ;
- owl:onProperty sphn:hasLabTest ;
- owl:someValuesFrom sphn:LabTest ] ) ],
sphn:SPHNConcept ;
skos:definition "occurrence in which one or multiple laboratory tests are performed on a biological specimen at a given time" ;
skos:scopeNote "For sphn:hasLabTest, instances of sphn:AntimicrobialSusceptibilityLabTest, sphn:MicrobiologyBiomoleculePresenceLabTest, sphn:MicrobiologyMicroscopyLabTest, sphn:MicroorganismIdentificationLabTest are not allowed" .
@@ -8275,9 +8281,15 @@ sphn:NutritionIntake a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8286,12 +8298,9 @@ sphn:NutritionIntake a owl:Class ;
owl:onProperty sphn:hasEnergyQuantity ] [ a owl:Restriction ;
owl:onProperty sphn:hasEnergyQuantity ;
owl:someValuesFrom sphn:Quantity ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -8304,15 +8313,6 @@ sphn:NutritionIntake a owl:Class ;
owl:onProperty sphn:hasSubstance ] [ a owl:Restriction ;
owl:onProperty sphn:hasSubstance ;
owl:someValuesFrom sphn:Substance ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8321,7 +8321,13 @@ sphn:NutritionIntake a owl:Class ;
owl:onProperty sphn:hasModeCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasModeCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:289002003 snomed:926364008 snomed:268472006 snomed:926365009 snomed:169741004 ) ] ] ) ],
+ owl:unionOf ( snomed:926365009 snomed:268472006 snomed:926364008 snomed:289002003 snomed:169741004 ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] ) ],
sphn:SPHNConcept ;
skos:definition "intake of nutritious substance and/or the respective amount of energy consumed" ;
skos:scopeNote "sphn:hasModeCode no subclasses allowed" .
@@ -8329,6 +8335,15 @@ sphn:NutritionIntake a owl:Class ;
sphn:RespiratoryRateMeasurement a owl:Class ;
rdfs:label "Respiratory Rate Measurement" ;
rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
@@ -8337,11 +8352,9 @@ sphn:RespiratoryRateMeasurement a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMethodCode ;
- owl:someValuesFrom snomed:128927009 ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8350,12 +8363,6 @@ sphn:RespiratoryRateMeasurement a owl:Class ;
owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
owl:onProperty sphn:hasMedicalDevice ;
owl:someValuesFrom sphn:MedicalDevice ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -8373,18 +8380,17 @@ sphn:RespiratoryRateMeasurement a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMethodCode ;
+ owl:someValuesFrom snomed:128927009 ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
sphn:Measurement ;
owl:equivalentClass snomed:408867002 ;
skos:definition "measurement of the frequency at which the breathing occurs" ;
@@ -8398,6 +8404,20 @@ sphn:SequencingRun a owl:Class ;
owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMeanReadDepth ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMeanReadDepth ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMeanReadDepth ;
+ owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMeanReadDepth ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasUnit ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom ucum:cblnbcbr ] ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -8407,17 +8427,18 @@ sphn:SequencingRun a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasReadCount ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAverageReadLength ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasReadCount ] [ a owl:Restriction ;
- owl:onProperty sphn:hasReadCount ;
+ owl:onProperty sphn:hasAverageReadLength ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAverageReadLength ;
owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasReadCount ;
+ owl:onProperty sphn:hasAverageReadLength ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasUnit ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
- owl:someValuesFrom ucum:cblnbcbr ] ] ] ) ],
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( ucum:cblbase_paircbr ucum:cblnucleotidecbr ) ] ] ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8435,9 +8456,17 @@ sphn:SequencingRun a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasReadCount ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ] ) ],
+ owl:onProperty sphn:hasReadCount ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasReadCount ;
+ owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasReadCount ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasUnit ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom ucum:cblnbcbr ] ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -8447,32 +8476,9 @@ sphn:SequencingRun a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAverageReadLength ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAverageReadLength ] [ a owl:Restriction ;
- owl:onProperty sphn:hasAverageReadLength ;
- owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasAverageReadLength ;
- owl:someValuesFrom [ a owl:Restriction ;
- owl:onProperty sphn:hasUnit ;
- owl:someValuesFrom [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( ucum:cblnucleotidecbr ucum:cblbase_paircbr ) ] ] ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMeanReadDepth ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMeanReadDepth ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMeanReadDepth ;
- owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMeanReadDepth ;
- owl:someValuesFrom [ a owl:Restriction ;
- owl:onProperty sphn:hasUnit ;
- owl:someValuesFrom [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom ucum:cblnbcbr ] ] ] ) ],
+ owl:onProperty sphn:hasIdentifier ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass <http://purl.obolibrary.org/obo/NCIT_C148088> ;
skos:definition "the valid and completed operation of a high-throughput sequencing instrument associated with a sequencing assay" ;
@@ -8492,18 +8498,18 @@ sphn:Software a owl:Class ;
owl:onProperty sphn:hasDescription ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasDescription ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasUniformResourceLocator ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasUniformResourceLocator ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasVersion ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasVersion ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasUniformResourceLocator ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasUniformResourceLocator ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:706689003 ;
skos:definition "Set of procedures and instructions in a data processing system" .
@@ -8522,12 +8528,6 @@ sphn:StandardOperatingProcedure a owl:Class ;
owl:onProperty sphn:hasVersion ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasVersion ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDescription ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDescription ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8536,26 +8536,35 @@ sphn:StandardOperatingProcedure a owl:Class ;
owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
owl:onProperty sphn:hasDataFile ;
owl:someValuesFrom sphn:DataFile ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDescription ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDescription ] ) ],
sphn:SPHNConcept ;
skos:definition "step-by-step instructions for carrying out routine operations imposed by the organization" ;
skos:scopeNote "For sphn:hasDataFile, instances of sphn:TimeSeriesDataFile are not allowed" .
sphn:VariantDescriptor a owl:Class ;
rdfs:label "Variant Descriptor" ;
- rdfs:subClassOf [ a owl:Class ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:onProperty sphn:hasNotation ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasNotation ;
+ owl:someValuesFrom sphn:VariantNotation ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasGenomicVariation ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasZygosityCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasGenomicVariation ] [ a owl:Restriction ;
- owl:onProperty sphn:hasGenomicVariation ;
- owl:someValuesFrom sphn:GenomicVariation ] ) ],
+ owl:onProperty sphn:hasZygosityCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasZygosityCode ;
+ owl:someValuesFrom geno:0000133 ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8567,32 +8576,29 @@ sphn:VariantDescriptor a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasGene ] [ a owl:Restriction ;
- owl:onProperty sphn:hasGene ;
- owl:someValuesFrom sphn:Gene ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasCode ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasZygosityCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAlleleOriginCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasZygosityCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasZygosityCode ;
- owl:someValuesFrom geno:0000133 ] ) ],
+ owl:onProperty sphn:hasAlleleOriginCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAlleleOriginCode ;
+ owl:someValuesFrom geno:0000877 ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8604,31 +8610,26 @@ sphn:VariantDescriptor a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAlleleOriginCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAlleleOriginCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasAlleleOriginCode ;
- owl:someValuesFrom geno:0000877 ] ) ],
+ owl:onProperty sphn:hasGene ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasGene ;
+ owl:someValuesFrom sphn:Gene ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasNotation ] [ a owl:Restriction ;
- owl:onProperty sphn:hasNotation ;
- owl:someValuesFrom sphn:VariantNotation ] ) ],
+ owl:onProperty sphn:hasGenomicVariation ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasGenomicVariation ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasGenomicVariation ;
+ owl:someValuesFrom sphn:GenomicVariation ] ) ],
sphn:SPHNConcept ;
skos:definition "human-readable description of the variant" ;
skos:note "sphn:hasCode allowed coding system: ClinVar, RefSNP or other" .
sphn:BloodPressureMeasurement a owl:Class ;
rdfs:label "Blood Pressure Measurement" ;
- rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMedicalDevice ;
- owl:someValuesFrom sphn:MedicalDevice ] ) ],
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -8638,9 +8639,12 @@ sphn:BloodPressureMeasurement a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMethodCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:46973005 snomed:716777001 ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8653,10 +8657,13 @@ sphn:BloodPressureMeasurement a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:8205005 snomed:7569003 snomed:344001 snomed:40983000 snomed:68367000 snomed:53840002 snomed:14975008 snomed:113257007 ) ] ] ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:unionOf ( snomed:53840002 snomed:68367000 snomed:14975008 snomed:40983000 snomed:8205005 snomed:7569003 snomed:344001 snomed:113257007 ) ] ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -8665,19 +8672,20 @@ sphn:BloodPressureMeasurement a owl:Class ;
owl:someValuesFrom sphn:BloodPressure ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMedicalDevice ;
+ owl:someValuesFrom sphn:MedicalDevice ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMethodCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:716777001 snomed:46973005 ) ] ] ) ],
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ;
+ owl:someValuesFrom sphn:Performer ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8686,12 +8694,10 @@ sphn:BloodPressureMeasurement a owl:Class ;
owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPerformer ;
- owl:someValuesFrom sphn:Performer ] ) ],
+ owl:onProperty sphn:hasStartDateTime ] ) ],
sphn:Measurement ;
owl:equivalentClass snomed:46973005 ;
skos:definition "measurement process of a blood pressure on an individual" ;
@@ -8699,18 +8705,7 @@ sphn:BloodPressureMeasurement a owl:Class ;
sphn:BodyHeightMeasurement a owl:Class ;
rdfs:label "Body Height Measurement" ;
- rdfs:subClassOf [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMethodCode ;
- owl:someValuesFrom snomed:128927009 ] ) ],
- [ a owl:Class ;
+ rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
@@ -8721,19 +8716,11 @@ sphn:BodyHeightMeasurement a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAssociatedEvent ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAssociatedEvent ] [ a owl:Restriction ;
- owl:onProperty sphn:hasAssociatedEvent ;
- owl:someValuesFrom sphn:Birth ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPerformer ;
- owl:someValuesFrom sphn:Performer ] ) ],
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMethodCode ;
+ owl:someValuesFrom snomed:128927009 ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -8742,24 +8729,43 @@ sphn:BodyHeightMeasurement a owl:Class ;
owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
owl:onProperty sphn:hasResult ;
owl:someValuesFrom sphn:BodyHeight ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ;
+ owl:someValuesFrom sphn:Performer ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAssociatedEvent ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAssociatedEvent ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAssociatedEvent ;
+ owl:someValuesFrom sphn:Birth ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -8776,34 +8782,35 @@ sphn:BodyTemperatureMeasurement a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasResult ;
+ owl:someValuesFrom sphn:BodyTemperature ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasBodySite ;
+ owl:someValuesFrom sphn:BodySite ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMethodCode ;
- owl:someValuesFrom snomed:128927009 ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPerformer ;
- owl:someValuesFrom sphn:Performer ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8815,29 +8822,28 @@ sphn:BodyTemperatureMeasurement a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
- owl:onProperty sphn:hasBodySite ;
- owl:someValuesFrom sphn:BodySite ] ) ],
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMethodCode ;
+ owl:someValuesFrom snomed:128927009 ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ;
+ owl:someValuesFrom sphn:Performer ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
- owl:onProperty sphn:hasResult ;
- owl:someValuesFrom sphn:BodyTemperature ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:onProperty sphn:hasStartDateTime ] ) ],
sphn:Measurement ;
owl:equivalentClass snomed:56342008 ;
skos:definition "measurement of the body temperature of the individual" ;
@@ -8856,40 +8862,29 @@ sphn:BodyWeightMeasurement a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
- owl:onProperty sphn:hasResult ;
- owl:someValuesFrom sphn:BodyWeight ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMedicalDevice ;
- owl:someValuesFrom sphn:MedicalDevice ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ;
+ owl:someValuesFrom sphn:Performer ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8901,17 +8896,28 @@ sphn:BodyWeightMeasurement a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPerformer ;
- owl:someValuesFrom sphn:Performer ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMedicalDevice ;
+ owl:someValuesFrom sphn:MedicalDevice ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasResult ;
+ owl:someValuesFrom sphn:BodyWeight ] ) ],
sphn:Measurement ;
owl:equivalentClass snomed:39857003 ;
skos:definition "measurement of the weight of the individual" ;
@@ -8919,24 +8925,18 @@ sphn:BodyWeightMeasurement a owl:Class ;
sphn:Diagnosis a owl:Class ;
rdfs:label "Diagnosis" ;
- rdfs:subClassOf [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ],
+ rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8945,12 +8945,18 @@ sphn:Diagnosis a owl:Class ;
owl:onProperty sphn:hasSubjectAge ] [ a owl:Restriction ;
owl:onProperty sphn:hasSubjectAge ;
owl:someValuesFrom sphn:Age ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasRecordDateTime ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:439401001 ;
skos:definition "determination of the presence of a disease, condition, or injury from expressed signs and symptoms and assessments such as physical examination, laboratory test, or the like" ;
@@ -8961,25 +8967,25 @@ sphn:GenomicVariation a owl:Class ;
rdfs:subClassOf sphn:SPHNConcept ;
owl:equivalentClass geno:0000476,
so:0001060 ;
- skos:definition "a genomic variation occurring at a defined position" .
+ skos:definition "a genomic variation occurring at a defined position" ;
+ sphn:replaces sphn-deprecated:GeneticVariation .
sphn:HealthcareEncounter a owl:Class ;
rdfs:label "Healthcare Encounter" ;
- rdfs:subClassOf [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
+ rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasOriginLocation ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasOriginLocation ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasOriginLocation ;
+ owl:someValuesFrom sphn:Location ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -8991,25 +8997,29 @@ sphn:HealthcareEncounter a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOriginLocation ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCurrentLocation ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOriginLocation ] [ a owl:Restriction ;
- owl:onProperty sphn:hasOriginLocation ;
+ owl:onProperty sphn:hasCurrentLocation ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCurrentLocation ;
owl:someValuesFrom sphn:Location ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCurrentLocation ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCurrentLocation ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCurrentLocation ;
- owl:someValuesFrom sphn:Location ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9018,18 +9028,15 @@ sphn:HealthcareEncounter a owl:Class ;
owl:onProperty sphn:hasTherapeuticArea ] [ a owl:Restriction ;
owl:onProperty sphn:hasTherapeuticArea ;
owl:someValuesFrom sphn:TherapeuticArea ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:308335008 ;
skos:definition "an interaction between an individual and a specific unit or service of a healthcare provider institute, e.g. emergency, intensive care unit, for the purpose of providing healthcare service(s) or assessing the health status of an individual" .
@@ -9057,31 +9064,6 @@ sphn:Location a owl:Class ;
sphn:OxygenSaturationMeasurement a owl:Class ;
rdfs:label "Oxygen Saturation Measurement" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
- owl:onProperty sphn:hasBodySite ;
- owl:someValuesFrom sphn:BodySite ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
- owl:onProperty sphn:hasResult ;
- owl:someValuesFrom sphn:OxygenSaturation ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMethodCode ;
- owl:someValuesFrom snomed:128927009 ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
@@ -9096,11 +9078,15 @@ sphn:OxygenSaturationMeasurement a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPerformer ;
- owl:someValuesFrom sphn:Performer ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasResult ;
+ owl:someValuesFrom sphn:OxygenSaturation ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9118,9 +9104,30 @@ sphn:OxygenSaturationMeasurement a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasBodySite ;
+ owl:someValuesFrom sphn:BodySite ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMethodCode ;
+ owl:someValuesFrom snomed:128927009 ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ;
+ owl:someValuesFrom sphn:Performer ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
sphn:Measurement ;
owl:equivalentClass snomed:104847001 ;
skos:definition "measurement of the oxygen saturation of the individual" ;
@@ -9130,54 +9137,18 @@ sphn:OxygenSaturationMeasurement a owl:Class ;
sphn:RadiotherapyProcedure a owl:Class ;
rdfs:label "Radiotherapy Procedure" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRadiationQuantity ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRadiationQuantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasRadiationQuantity ;
- owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasRadiationQuantity ;
- owl:someValuesFrom [ a owl:Restriction ;
- owl:onProperty sphn:hasUnit ;
- owl:someValuesFrom [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( ucum:mCi ucum:Gy ucum:cGy ucum:MBq ) ] ] ] ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:152198000 snomed:168524008 snomed:78080008 snomed:33195004 snomed:395096001 snomed:115959002 snomed:74964007 snomed:399315003 ) ] ] ) ],
+ owl:unionOf ( snomed:74964007 snomed:395096001 snomed:33195004 snomed:115959002 snomed:78080008 snomed:399315003 snomed:168524008 snomed:152198000 ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9185,13 +9156,25 @@ sphn:RadiotherapyProcedure a owl:Class ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasFractionsNumber ] [ a owl:Restriction ;
owl:onProperty sphn:hasFractionsNumber ;
- owl:someValuesFrom sphn:Quantity ] ) ],
+ owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFractionsNumber ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasUnit ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom ucum:cblnbcbr ] ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
owl:onProperty sphn:hasBodySite ;
owl:someValuesFrom sphn:BodySite ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9200,19 +9183,41 @@ sphn:RadiotherapyProcedure a owl:Class ;
owl:onProperty sphn:hasIntent ] [ a owl:Restriction ;
owl:onProperty sphn:hasIntent ;
owl:someValuesFrom sphn:Intent ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRadiationQuantity ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRadiationQuantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRadiationQuantity ;
+ owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRadiationQuantity ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasUnit ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( ucum:MBq ucum:Gy ucum:cGy ucum:mCi ) ] ] ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
sphn:MedicalProcedure ;
owl:equivalentClass snomed:108290001 ;
skos:definition "given radiotherapy procedure during oncological treatment" ;
skos:scopeNote "sphn:hasCode no subclasses allowed" .
-sphn:hasOrganism a owl:ObjectProperty ;
- rdfs:label "has organism" ;
- rdfs:domain [ a owl:Class ;
- owl:unionOf ( sphn:Gene sphn:SPHNConcept sphn:Isolate sphn:Protein sphn:Transcript ) ] ;
- rdfs:range sphn:Organism ;
- rdfs:subPropertyOf sphn:SPHNAttributeObject ;
- skos:definition "organism associated to the concept" .
-
sphn:hasPredecessor a owl:ObjectProperty ;
rdfs:label "has predecessor" ;
rdfs:domain [ a owl:Class ;
@@ -9250,6 +9255,15 @@ sphn:hasSubjectAge a owl:ObjectProperty ;
sphn:AllergyEpisode a owl:Class ;
rdfs:label "Allergy Episode" ;
rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasExposure ] [ a owl:Restriction ;
@@ -9263,6 +9277,31 @@ sphn:AllergyEpisode a owl:Class ;
owl:onProperty sphn:hasDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSeverityCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSeverityCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSeverityCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:24484000 snomed:255604002 snomed:6736007 ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAllergen ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAllergen ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAllergen ;
+ owl:someValuesFrom sphn:Allergen ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDuration ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDuration ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDuration ;
+ owl:someValuesFrom sphn:Quantity ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -9278,17 +9317,6 @@ sphn:AllergyEpisode a owl:Class ;
owl:onProperty sphn:hasCertaintyCode ;
owl:someValuesFrom [ a owl:Class ;
owl:unionOf ( snomed:415684004 snomed:410592001 snomed:410605003 ) ] ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
- owl:onProperty sphn:hasBodySite ;
- owl:someValuesFrom sphn:BodySite ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9300,34 +9328,11 @@ sphn:AllergyEpisode a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAllergen ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAllergen ] [ a owl:Restriction ;
- owl:onProperty sphn:hasAllergen ;
- owl:someValuesFrom sphn:Allergen ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSeverityCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSeverityCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSeverityCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:24484000 snomed:6736007 snomed:255604002 ) ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDuration ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDuration ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDuration ;
- owl:someValuesFrom sphn:Quantity ] ) ],
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasBodySite ;
+ owl:someValuesFrom sphn:BodySite ] ) ],
sphn:SPHNConcept ;
skos:definition "manifestation of an allergic reaction following an exposure to an allergen" ;
skos:scopeNote "For sphn:hasExposure, instances of sphn:TobaccoExposure are not allowed",
@@ -9337,12 +9342,6 @@ sphn:AllergyEpisode a owl:Class ;
sphn:CircumferenceMeasurement a owl:Class ;
rdfs:label "Circumference Measurement" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
@@ -9351,22 +9350,17 @@ sphn:CircumferenceMeasurement a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAssociatedEvent ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMedicalDevice ;
- owl:someValuesFrom sphn:MedicalDevice ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasAssociatedEvent ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAssociatedEvent ;
+ owl:someValuesFrom sphn:Birth ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
- owl:onProperty sphn:hasBodySite ;
- owl:someValuesFrom sphn:BodySite ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9375,28 +9369,12 @@ sphn:CircumferenceMeasurement a owl:Class ;
owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
owl:onProperty sphn:hasPerformer ;
owl:someValuesFrom sphn:Performer ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
- owl:onProperty sphn:hasResult ;
- owl:someValuesFrom sphn:Circumference ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasEndDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAssociatedEvent ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAssociatedEvent ] [ a owl:Restriction ;
- owl:onProperty sphn:hasAssociatedEvent ;
- owl:someValuesFrom sphn:Birth ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9405,12 +9383,39 @@ sphn:CircumferenceMeasurement a owl:Class ;
owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasMethodCode ;
owl:someValuesFrom snomed:128927009 ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasStartDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasResult ;
+ owl:someValuesFrom sphn:Circumference ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasBodySite ;
+ owl:someValuesFrom sphn:BodySite ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMedicalDevice ;
+ owl:someValuesFrom sphn:MedicalDevice ] ) ],
sphn:Measurement ;
skos:definition "measurement of the circumference measure of a body site" ;
skos:scopeNote "For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer, sphn:Implant are not allowed" ;
@@ -9421,15 +9426,22 @@ sphn:ElectrocardiographicProcedure a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
- owl:onProperty sphn:hasBodySite ;
- owl:someValuesFrom sphn:BodySite ] ) ],
+ owl:onProperty sphn:hasSubjectPhysiologicState ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPhysiologicState ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectPhysiologicState ;
+ owl:someValuesFrom sphn:PhysiologicState ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectPhysiologicState ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:128975004 snomed:128976003 ) ] ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom snomed:29303009 ] ) ],
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9446,10 +9458,10 @@ sphn:ElectrocardiographicProcedure a owl:Class ;
owl:someValuesFrom ucum:cblnbcbr ] ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9465,10 +9477,10 @@ sphn:ElectrocardiographicProcedure a owl:Class ;
owl:unionOf ( snomed:261004008 snomed:360156006 ) ] ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasBodySite ;
+ owl:someValuesFrom sphn:BodySite ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9479,32 +9491,25 @@ sphn:ElectrocardiographicProcedure a owl:Class ;
owl:someValuesFrom sphn:Electrocardiogram ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom snomed:29303009 ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPhysiologicState ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPhysiologicState ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSubjectPhysiologicState ;
- owl:someValuesFrom sphn:PhysiologicState ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSubjectPhysiologicState ;
- owl:someValuesFrom [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:128976003 snomed:128975004 ) ] ] ] ) ],
sphn:MedicalProcedure ;
owl:equivalentClass snomed:29303009 ;
skos:definition "electrographic procedure on the heart which results in a graph of voltage versus time visualizing the electrical activity of the heart muscle using electrodes placed on the skin" ;
@@ -9514,26 +9519,6 @@ sphn:ElectrocardiographicProcedure a owl:Class ;
sphn:HeartRateMeasurement a owl:Class ;
rdfs:label "Heart Rate Measurement" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMethodCode ;
- owl:someValuesFrom snomed:128927009 ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
- owl:onProperty sphn:hasResult ;
- owl:someValuesFrom sphn:HeartRate ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
@@ -9550,20 +9535,23 @@ sphn:HeartRateMeasurement a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPhysiologicState ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPhysiologicState ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSubjectPhysiologicState ;
- owl:someValuesFrom sphn:PhysiologicState ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasResult ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasResult ;
+ owl:someValuesFrom sphn:HeartRate ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPerformer ;
+ owl:someValuesFrom sphn:Performer ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9572,20 +9560,37 @@ sphn:HeartRateMeasurement a owl:Class ;
owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
owl:onProperty sphn:hasBodySite ;
owl:someValuesFrom sphn:BodySite ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectPhysiologicState ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPerformer ;
- owl:someValuesFrom sphn:Performer ] ) ],
+ owl:onProperty sphn:hasSubjectPhysiologicState ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectPhysiologicState ;
+ owl:someValuesFrom sphn:PhysiologicState ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStartDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMethodCode ;
+ owl:someValuesFrom snomed:128927009 ] ) ],
sphn:Measurement ;
owl:equivalentClass snomed:65653002 ;
skos:definition "measurement of the heart rate of the individual" ;
@@ -9596,20 +9601,19 @@ sphn:SequencingAnalysis a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ],
+ owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStandardOperatingProcedure ;
+ owl:someValuesFrom sphn:StandardOperatingProcedure ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasInput ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasReferenceSequence ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasInput ] [ a owl:Restriction ;
- owl:onProperty sphn:hasInput ;
- owl:someValuesFrom sphn:DataFile ] ) ],
+ owl:onProperty sphn:hasReferenceSequence ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasReferenceSequence ;
+ owl:someValuesFrom sphn:ReferenceSequence ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -9618,22 +9622,43 @@ sphn:SequencingAnalysis a owl:Class ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:Code sphn:Terminology edam:operation_2945 ) ] ] ) ],
+ owl:unionOf ( edam:operation_2945 sphn:Terminology sphn:Code ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasPredecessor ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPredecessor ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( sphn:DataProcessing sphn:Assay ) ] ] ) ],
[ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOutput ] [ a owl:Restriction ;
- owl:onProperty sphn:hasOutput ;
+ owl:onProperty sphn:hasInput ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasInput ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasInput ;
owl:someValuesFrom sphn:DataFile ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasQualityControlMetric ] [ a owl:Restriction ;
owl:onProperty sphn:hasQualityControlMetric ;
owl:someValuesFrom sphn:QualityControlMetric ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasOutput ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasOutput ;
+ owl:someValuesFrom sphn:DataFile ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9645,29 +9670,9 @@ sphn:SequencingAnalysis a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
- owl:onProperty sphn:hasStandardOperatingProcedure ;
- owl:someValuesFrom sphn:StandardOperatingProcedure ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasReferenceSequence ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasReferenceSequence ] [ a owl:Restriction ;
- owl:onProperty sphn:hasReferenceSequence ;
- owl:someValuesFrom sphn:ReferenceSequence ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPredecessor ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPredecessor ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:Assay sphn:DataProcessing ) ] ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasStartDateTime ] ) ],
sphn:DataProcessing ;
skos:definition "analysis of the output of a nucleic acid sequencing assay" ;
skos:note "sphn:hasCode allowed coding system: EDAM or other" .
@@ -9692,12 +9697,10 @@ sphn:DrugAdministrationEvent a owl:Class ;
owl:someValuesFrom sphn:TimePattern ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDuration ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDuration ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDuration ;
- owl:someValuesFrom sphn:Quantity ] ) ],
+ owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -9706,9 +9709,6 @@ sphn:DrugAdministrationEvent a owl:Class ;
owl:onProperty sphn:hasDrug ] [ a owl:Restriction ;
owl:onProperty sphn:hasDrug ;
owl:someValuesFrom sphn:Drug ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9717,19 +9717,10 @@ sphn:DrugAdministrationEvent a owl:Class ;
owl:onProperty sphn:hasReasonToStopCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasReasonToStopCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:31438003 snomed:399307001 snomed:419620001 snomed:182844005 snomed:182845006 snomed:182846007 snomed:395007004 snomed:182872003 snomed:74964007 snomed:441308009 snomed:395009001 ) ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
+ owl:unionOf ( snomed:31438003 snomed:399307001 snomed:441308009 snomed:74964007 snomed:395007004 snomed:182844005 snomed:395009001 snomed:182872003 snomed:182845006 snomed:419620001 snomed:182846007 ) ] ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9750,6 +9741,20 @@ sphn:DrugAdministrationEvent a owl:Class ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDuration ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDuration ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDuration ;
+ owl:someValuesFrom sphn:Quantity ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:182832007 ;
skos:definition "single event at which a drug was administered to the patient; this could be a single time point in case of a pill/cream or a duration in case of a single infusion pack or a single patch; one or many drug administration events are initiated by a drug prescription depending on the frequency stated in the prescription" ;
@@ -9760,18 +9765,9 @@ sphn:NucleotideSequence a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSequenceLength ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDerivedSequence ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSequenceLength ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSequenceLength ;
- owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSequenceLength ;
- owl:someValuesFrom [ a owl:Restriction ;
- owl:onProperty sphn:hasUnit ;
- owl:someValuesFrom [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( ucum:cblnucleotidecbr ucum:cblbase_paircbr ) ] ] ] ] ) ],
+ owl:onProperty sphn:hasDerivedSequence ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9781,9 +9777,18 @@ sphn:NucleotideSequence a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDerivedSequence ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSequenceLength ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDerivedSequence ] ) ],
+ owl:onProperty sphn:hasSequenceLength ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSequenceLength ;
+ owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSequenceLength ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasUnit ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( ucum:cblbase_paircbr ucum:cblnucleotidecbr ) ] ] ] ] ) ],
sphn:SPHNConcept ;
skos:definition "a linear arrangement of nucleotides that make up the DNA or RNA sequence" .
@@ -9795,14 +9800,6 @@ sphn:Substance a owl:Class ;
owl:onProperty sphn:hasGenericName ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasGenericName ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasQuantity ;
- owl:someValuesFrom sphn:Quantity ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9811,10 +9808,18 @@ sphn:Substance a owl:Class ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:Terminology snomed:105590001 sphn:Code ) ] ] ) ],
+ owl:unionOf ( snomed:105590001 sphn:Terminology sphn:Code ) ] ] ) ],
[ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasQuantity ;
+ owl:someValuesFrom sphn:Quantity ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:105590001 ;
skos:definition "any matter of defined composition that has discrete existence, whose origin may be biological, mineral or chemical" ;
@@ -9823,6 +9828,36 @@ sphn:Substance a owl:Class ;
sphn:TobaccoExposure a owl:Class ;
rdfs:label "Tobacco Exposure" ;
rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasTypeCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasTypeCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasTypeCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:43381005 snomed:77176002 snomed:228493008 snomed:35361000087100 snomed:228513009 snomed:722499006 snomed:228494002 snomed:702979003 snomed:8517006 snomed:81703003 ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasRecordDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDegreeCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDegreeCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDegreeCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( snomed:75540009 snomed:1255665007 snomed:62482003 ) ] ] ) ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
@@ -9850,18 +9885,6 @@ sphn:TobaccoExposure a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom ucum:a ] ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9870,51 +9893,33 @@ sphn:TobaccoExposure a owl:Class ;
owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAgentCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAgentCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasAgentCode ;
- owl:someValuesFrom snomed:39953003 ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRecordDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRouteCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasRouteCode ;
- owl:someValuesFrom snomed:138875005 ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTypeCode ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTypeCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasTypeCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:35361000087100 snomed:722499006 snomed:8517006 snomed:228494002 snomed:228513009 snomed:228493008 snomed:81703003 snomed:77176002 snomed:702979003 snomed:43381005 ) ] ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDegreeCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDegreeCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDegreeCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:62482003 snomed:1255665007 snomed:75540009 ) ] ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRouteCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRouteCode ;
+ owl:someValuesFrom snomed:138875005 ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAgentCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasAgentCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAgentCode ;
+ owl:someValuesFrom snomed:39953003 ] ) ],
sphn:Exposure ;
owl:equivalentClass snomed:229819007 ;
skos:definition "episode of exposure of an individual to tobacco in various forms" ;
@@ -9924,11 +9929,26 @@ sphn:TobaccoExposure a owl:Class ;
sphn:TumorSpecimen a owl:Class ;
rdfs:label "Tumor Specimen" ;
rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSharedIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSharedIdentifier ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCollectionDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCollectionDateTime ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasIdentifier ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9937,17 +9957,6 @@ sphn:TumorSpecimen a owl:Class ;
owl:onProperty sphn:hasPrimaryContainer ] [ a owl:Restriction ;
owl:onProperty sphn:hasPrimaryContainer ;
owl:someValuesFrom sphn:Sample_primaryContainer ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMedicalDevice ;
- owl:someValuesFrom sphn:MedicalDevice ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9962,17 +9971,14 @@ sphn:TumorSpecimen a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom ucum:percent ] ] ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFixationType ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFixationType ] [ a owl:Restriction ;
- owl:onProperty sphn:hasFixationType ;
- owl:someValuesFrom sphn:Sample_fixationType ] ) ],
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMedicalDevice ;
+ owl:someValuesFrom sphn:MedicalDevice ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -9982,21 +9988,14 @@ sphn:TumorSpecimen a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMaterialTypeCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMaterialTypeCode ;
- owl:someValuesFrom snomed:123038009 ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSharedIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFixationType ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSharedIdentifier ] ) ],
+ owl:onProperty sphn:hasFixationType ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFixationType ;
+ owl:someValuesFrom sphn:Sample_fixationType ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10005,6 +10004,12 @@ sphn:TumorSpecimen a owl:Class ;
owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
owl:onProperty sphn:hasBodySite ;
owl:someValuesFrom sphn:BodySite ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMaterialTypeCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMaterialTypeCode ;
+ owl:someValuesFrom snomed:123038009 ] ) ],
sphn:Sample ;
owl:equivalentClass snomed:258435002 ;
skos:definition "tumor specimen, volume and fixation method used" .
@@ -10028,21 +10033,26 @@ sphn:hasSoftware a owl:ObjectProperty ;
sphn:Assay a owl:Class ;
rdfs:label "Assay" ;
- rdfs:subClassOf [ a owl:Class ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDataFile ;
- owl:someValuesFrom sphn:DataFile ] ) ],
+ owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSample ;
+ owl:someValuesFrom sphn:Sample ] ) ],
[ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPredecessor ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPredecessor ;
- owl:someValuesFrom sphn:SampleProcessing ] ) ],
+ owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStandardOperatingProcedure ;
+ owl:someValuesFrom sphn:StandardOperatingProcedure ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10052,17 +10062,15 @@ sphn:Assay a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
- owl:onProperty sphn:hasStandardOperatingProcedure ;
- owl:someValuesFrom sphn:StandardOperatingProcedure ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ],
+ owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDataFile ;
+ owl:someValuesFrom sphn:DataFile ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasPredecessor ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPredecessor ;
+ owl:someValuesFrom sphn:SampleProcessing ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -10071,19 +10079,16 @@ sphn:Assay a owl:Class ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( obi:0000070 sphn:Terminology sphn:Code ) ] ] ) ],
+ owl:unionOf ( sphn:Terminology obi:0000070 sphn:Code ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasIdentifier ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSample ;
- owl:someValuesFrom sphn:Sample ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ],
sphn:SPHNConcept ;
owl:equivalentClass obi:0000070 ;
skos:definition "a process with the objective to produce information about a sample by examining it" ;
@@ -10092,17 +10097,22 @@ sphn:Assay a owl:Class ;
sphn:Birth a owl:Class ;
rdfs:label "Birth" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
owl:onProperty sphn:hasMedicalDevice ;
owl:someValuesFrom sphn:MedicalDevice ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDate ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDate ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDate ;
+ owl:someValuesFrom sphn:BirthDate ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10125,6 +10135,12 @@ sphn:Birth a owl:Class ;
owl:onProperty sphn:hasCountry ] [ a owl:Restriction ;
owl:onProperty sphn:hasCountry ;
owl:someValuesFrom sphn:Country ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10133,6 +10149,12 @@ sphn:Birth a owl:Class ;
owl:onProperty sphn:hasDeliveryModeCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasDeliveryModeCode ;
owl:someValuesFrom snomed:118215003 ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10141,23 +10163,6 @@ sphn:Birth a owl:Class ;
owl:onProperty sphn:hasGestationalAge ] [ a owl:Restriction ;
owl:onProperty sphn:hasGestationalAge ;
owl:someValuesFrom sphn:GestationalAgeAtBirth ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDate ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDate ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDate ;
- owl:someValuesFrom sphn:BirthDate ] ) ],
sphn:SPHNConcept ;
skos:definition "the event of being born" ;
skos:scopeNote "For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer, sphn:Implant are not allowed" .
@@ -10167,15 +10172,11 @@ sphn:MedicalProcedure a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIntent ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ],
+ owl:onProperty sphn:hasIntent ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIntent ;
+ owl:someValuesFrom sphn:Intent ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -10184,30 +10185,34 @@ sphn:MedicalProcedure a owl:Class ;
owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIntent ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIntent ] [ a owl:Restriction ;
- owl:onProperty sphn:hasIntent ;
- owl:someValuesFrom sphn:Intent ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
owl:onProperty sphn:hasBodySite ;
owl:someValuesFrom sphn:BodySite ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:71388002 ;
skos:definition "invasive or non-invasive intervention performed for, with or on behalf of an individual whose purpose is to assess, improve, maintain, promote or modify health, functioning or health conditions" ;
@@ -10223,7 +10228,7 @@ sphn:Performer a owl:Class ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( snomed:14679004 snomed:125676002 ) ] ] ) ],
+ owl:unionOf ( snomed:125676002 snomed:14679004 ) ] ] ) ],
sphn:SPHNConcept ;
skos:definition "person who carried out the action" .
@@ -10244,6 +10249,14 @@ sphn:hasNumericalReference a owl:ObjectProperty ;
rdfs:subPropertyOf sphn:SPHNAttributeObject ;
skos:definition "numerical reference associated to the concept" .
+sphn:hasOrganism a owl:ObjectProperty ;
+ rdfs:label "has organism" ;
+ rdfs:domain [ a owl:Class ;
+ owl:unionOf ( sphn:Gene sphn:SPHNConcept sphn:Isolate sphn:MicroorganismIdentificationResult sphn:Protein sphn:Transcript ) ] ;
+ rdfs:range sphn:Organism ;
+ rdfs:subPropertyOf sphn:SPHNAttributeObject ;
+ skos:definition "organism associated to the concept" .
+
sphn:hasTestKit a owl:ObjectProperty ;
rdfs:label "has test kit" ;
rdfs:domain [ a owl:Class ;
@@ -10254,24 +10267,39 @@ sphn:hasTestKit a owl:ObjectProperty ;
sphn:DataProcessing a owl:Class ;
rdfs:label "Data Processing" ;
- rdfs:subClassOf [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ],
+ rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasPredecessor ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPredecessor ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( sphn:DataProcessing sphn:Assay ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOutput ] [ a owl:Restriction ;
- owl:onProperty sphn:hasOutput ;
- owl:someValuesFrom sphn:DataFile ] ) ],
+ owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStandardOperatingProcedure ;
+ owl:someValuesFrom sphn:StandardOperatingProcedure ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStartDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasInput ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasInput ;
+ owl:someValuesFrom sphn:DataFile ] ) ],
[ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ],
+ owl:onProperty sphn:hasAdministrativeCase ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -10279,31 +10307,14 @@ sphn:DataProcessing a owl:Class ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( edam:operation_0004 sphn:Terminology sphn:Code obi:0200000 ) ] ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
- owl:onProperty sphn:hasStandardOperatingProcedure ;
- owl:someValuesFrom sphn:StandardOperatingProcedure ] ) ],
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( sphn:Terminology edam:operation_0004 sphn:Code obi:0200000 ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasInput ] [ a owl:Restriction ;
- owl:onProperty sphn:hasInput ;
+ owl:onProperty sphn:hasOutput ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasOutput ;
owl:someValuesFrom sphn:DataFile ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQualityControlMetric ] [ a owl:Restriction ;
- owl:onProperty sphn:hasQualityControlMetric ;
- owl:someValuesFrom sphn:QualityControlMetric ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10315,10 +10326,12 @@ sphn:DataProcessing a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPredecessor ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPredecessor ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:Assay sphn:DataProcessing ) ] ] ) ],
+ owl:onProperty sphn:hasQualityControlMetric ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasQualityControlMetric ;
+ owl:someValuesFrom sphn:QualityControlMetric ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
sphn:SPHNConcept ;
skos:definition "a process that produces output data from input data" ;
skos:note "sphn:hasCode allowed coding system: EDAM, OBI or other" .
@@ -10327,81 +10340,81 @@ sphn:DrugPrescription a owl:Class ;
rdfs:label "Drug Prescription" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasFirstAdministrationDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRecordDateTime ] ) ],
+ owl:onProperty sphn:hasFirstAdministrationDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasDrug ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:onProperty sphn:hasDrug ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDrug ;
+ owl:someValuesFrom sphn:Drug ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIndicationToStart ] [ a owl:Restriction ;
- owl:onProperty sphn:hasIndicationToStart ;
- owl:someValuesFrom sphn:Diagnosis ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasTimePattern ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasTimePattern ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasTimePattern ;
+ owl:someValuesFrom sphn:TimePattern ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFrequency ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRecordDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFrequency ] [ a owl:Restriction ;
- owl:onProperty sphn:hasFrequency ;
- owl:someValuesFrom sphn:Quantity ] ) ],
+ owl:onProperty sphn:hasRecordDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrationRouteCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrationRouteCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasAdministrationRouteCode ;
- owl:someValuesFrom snomed:284009009 ] ) ],
+ owl:onProperty sphn:hasIntent ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIntent ;
+ owl:someValuesFrom sphn:Intent ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasLastAdministrationDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasLastAdministrationDateTime ] ) ],
+ owl:onProperty sphn:hasIndicationToStart ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIndicationToStart ;
+ owl:someValuesFrom sphn:Diagnosis ] ) ],
[ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIntent ] [ a owl:Restriction ;
- owl:onProperty sphn:hasIntent ;
- owl:someValuesFrom sphn:Intent ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTimePattern ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasLastAdministrationDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTimePattern ] [ a owl:Restriction ;
- owl:onProperty sphn:hasTimePattern ;
- owl:someValuesFrom sphn:TimePattern ] ) ],
+ owl:onProperty sphn:hasLastAdministrationDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDrug ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDrug ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDrug ;
- owl:someValuesFrom sphn:Drug ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFirstAdministrationDateTime ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrationRouteCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFirstAdministrationDateTime ] ) ],
+ owl:onProperty sphn:hasAdministrationRouteCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrationRouteCode ;
+ owl:someValuesFrom snomed:284009009 ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasFrequency ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasFrequency ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFrequency ;
+ owl:someValuesFrom sphn:Quantity ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:33633005 ;
skos:definition "plan that defines at which frequency a drug should be administered to a patient with a given quantity; at every frequency time point a drug administration event should occur" .
@@ -10411,9 +10424,11 @@ sphn:Exposure a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasRouteCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasRouteCode ;
- owl:someValuesFrom snomed:138875005 ] ) ],
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasQuantity ;
+ owl:someValuesFrom sphn:Quantity ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10431,17 +10446,18 @@ sphn:Exposure a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQuantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasQuantity ;
- owl:someValuesFrom sphn:Quantity ] ) ],
+ owl:onProperty sphn:hasStartDateTime ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10450,12 +10466,6 @@ sphn:Exposure a owl:Class ;
owl:onProperty sphn:hasDuration ] [ a owl:Restriction ;
owl:onProperty sphn:hasDuration ;
owl:someValuesFrom sphn:Quantity ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEndDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10470,15 +10480,18 @@ sphn:Exposure a owl:Class ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRouteCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasRouteCode ;
+ owl:someValuesFrom snomed:138875005 ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEndDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ owl:onProperty sphn:hasEndDateTime ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:418715001 ;
skos:definition "contact between a physical, biological, or chemical agent and an individual" .
@@ -10486,45 +10499,39 @@ sphn:Exposure a owl:Class ;
sphn:Isolate a owl:Class ;
rdfs:label "Isolate" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCollectionDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCollectionDateTime ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPrimaryContainer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPrimaryContainer ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPrimaryContainer ;
- owl:someValuesFrom sphn:Sample_primaryContainer ] ) ],
+ owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasBodySite ;
+ owl:someValuesFrom sphn:BodySite ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasIdentifier ],
[ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasOrganism ;
+ owl:someValuesFrom sphn:Organism ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFixationType ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSharedIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFixationType ] [ a owl:Restriction ;
- owl:onProperty sphn:hasFixationType ;
- owl:someValuesFrom sphn:Sample_fixationType ] ) ],
+ owl:onProperty sphn:hasSharedIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10534,33 +10541,39 @@ sphn:Isolate a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMedicalDevice ;
- owl:someValuesFrom sphn:MedicalDevice ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSharedIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFixationType ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSharedIdentifier ] ) ],
+ owl:onProperty sphn:hasFixationType ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFixationType ;
+ owl:someValuesFrom sphn:Sample_fixationType ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasBodySite ] [ a owl:Restriction ;
- owl:onProperty sphn:hasBodySite ;
- owl:someValuesFrom sphn:BodySite ] ) ],
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMedicalDevice ;
+ owl:someValuesFrom sphn:MedicalDevice ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPrimaryContainer ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOrganism ] [ a owl:Restriction ;
- owl:onProperty sphn:hasOrganism ;
- owl:someValuesFrom sphn:Organism ] ) ],
+ owl:onProperty sphn:hasPrimaryContainer ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPrimaryContainer ;
+ owl:someValuesFrom sphn:Sample_primaryContainer ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCollectionDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCollectionDateTime ] ) ],
sphn:Sample ;
owl:equivalentClass snomed:119303007 ;
skos:definition "a specific individual microbe and its clone separated on a single occasion from a sample taken from a host or culture system" .
@@ -10570,9 +10583,9 @@ sphn:LabAnalyzer a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasProductCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasProductCode ] ) ],
+ owl:onProperty sphn:hasSoftware ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSoftware ;
+ owl:someValuesFrom sphn:Software ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10585,9 +10598,9 @@ sphn:LabAnalyzer a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSoftware ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSoftware ;
- owl:someValuesFrom sphn:Software ] ) ],
+ owl:onProperty sphn:hasProductCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasProductCode ] ) ],
sphn:MedicalDevice ;
skos:definition "laboratory analyzer used to assess medical laboratory samples" ;
skos:note "sphn:hasProductCode allowed coding system: UDI-DI from GUDID or other",
@@ -10596,14 +10609,6 @@ sphn:LabAnalyzer a owl:Class ;
sphn:ChromosomalLocation a owl:Class ;
rdfs:label "Chromosomal Location" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasChromosome ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasChromosome ] [ a owl:Restriction ;
- owl:onProperty sphn:hasChromosome ;
- owl:someValuesFrom sphn:Chromosome ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasEndCytobandCode ] [ a owl:Restriction ;
@@ -10619,6 +10624,14 @@ sphn:ChromosomalLocation a owl:Class ;
owl:onProperty sphn:hasStartCytobandCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasStartCytobandCode ;
owl:someValuesFrom sphn:Code ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasChromosome ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasChromosome ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasChromosome ;
+ owl:someValuesFrom sphn:Chromosome ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass geno:0000614,
so:0000830 ;
@@ -10631,20 +10644,9 @@ sphn:SampleProcessing a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
- owl:onProperty sphn:hasStandardOperatingProcedure ;
- owl:someValuesFrom sphn:StandardOperatingProcedure ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ owl:onProperty sphn:hasOutput ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasOutput ;
+ owl:someValuesFrom sphn:Sample ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10654,33 +10656,44 @@ sphn:SampleProcessing a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOutput ] [ a owl:Restriction ;
- owl:onProperty sphn:hasOutput ;
- owl:someValuesFrom sphn:Sample ] ) ],
+ owl:onProperty sphn:hasQualityControlMetric ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasQualityControlMetric ;
+ owl:someValuesFrom sphn:QualityControlMetric ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ],
[ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasQualityControlMetric ] [ a owl:Restriction ;
- owl:onProperty sphn:hasQualityControlMetric ;
- owl:someValuesFrom sphn:QualityControlMetric ] ) ],
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasInput ] [ a owl:Restriction ;
- owl:onProperty sphn:hasInput ;
- owl:someValuesFrom sphn:Sample ] ) ],
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ],
+ owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStandardOperatingProcedure ;
+ owl:someValuesFrom sphn:StandardOperatingProcedure ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasInput ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasInput ;
+ owl:someValuesFrom sphn:Sample ] ) ],
sphn:SPHNConcept ;
skos:definition "a process that prepares a sample for a subsequent process" ;
skos:scopeNote "For sphn:hasOutput, instances of sphn:TumorSpecimen are not allowed" .
@@ -10695,24 +10708,54 @@ sphn:SequencingAssay a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIntendedReadLength ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ] ) ],
+ owl:onProperty sphn:hasIntendedReadLength ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIntendedReadLength ;
+ owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIntendedReadLength ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasUnit ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( ucum:cblbase_paircbr ucum:cblnucleotidecbr ) ] ] ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSample ;
- owl:someValuesFrom sphn:Sample ] ) ],
+ owl:onProperty sphn:hasIntendedReadDepth ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasIntendedReadDepth ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIntendedReadDepth ;
+ owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIntendedReadDepth ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasUnit ;
+ owl:someValuesFrom [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom ucum:cblnbcbr ] ] ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
- owl:onProperty sphn:hasDataFile ;
- owl:someValuesFrom sphn:DataFile ] ) ],
+ owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStandardOperatingProcedure ;
+ owl:someValuesFrom sphn:StandardOperatingProcedure ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasLibraryPreparation ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasLibraryPreparation ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasLibraryPreparation ;
+ owl:someValuesFrom sphn:LibraryPreparation ] ) ],
[ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ],
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ],
@@ -10722,23 +10765,14 @@ sphn:SequencingAssay a owl:Class ;
owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasStartDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( efo:0001455 obi:0000070 sphn:Terminology sphn:Code ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasLibraryPreparation ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSequencingInstrument ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasLibraryPreparation ] [ a owl:Restriction ;
- owl:onProperty sphn:hasLibraryPreparation ;
- owl:someValuesFrom sphn:LibraryPreparation ] ) ],
+ owl:onProperty sphn:hasSequencingInstrument ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSequencingInstrument ;
+ owl:someValuesFrom sphn:SequencingInstrument ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10748,57 +10782,36 @@ sphn:SequencingAssay a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIntendedReadDepth ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIntendedReadDepth ] [ a owl:Restriction ;
- owl:onProperty sphn:hasIntendedReadDepth ;
- owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasIntendedReadDepth ;
- owl:someValuesFrom [ a owl:Restriction ;
- owl:onProperty sphn:hasUnit ;
- owl:someValuesFrom [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom ucum:cblnbcbr ] ] ] ) ],
+ owl:onProperty sphn:hasDataFile ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasDataFile ;
+ owl:someValuesFrom sphn:DataFile ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSequencingRun ] [ a owl:Restriction ;
owl:onProperty sphn:hasSequencingRun ;
owl:someValuesFrom sphn:SequencingRun ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIntendedReadLength ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIntendedReadLength ] [ a owl:Restriction ;
- owl:onProperty sphn:hasIntendedReadLength ;
- owl:someValuesFrom sphn:Quantity ] [ a owl:Restriction ;
- owl:onProperty sphn:hasIntendedReadLength ;
- owl:someValuesFrom [ a owl:Restriction ;
- owl:onProperty sphn:hasUnit ;
- owl:someValuesFrom [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( ucum:cblnucleotidecbr ucum:cblbase_paircbr ) ] ] ] ] ) ],
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( efo:0001455 sphn:Terminology obi:0000070 sphn:Code ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSequencingInstrument ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSequencingInstrument ] [ a owl:Restriction ;
- owl:onProperty sphn:hasSequencingInstrument ;
- owl:someValuesFrom sphn:SequencingInstrument ] ) ],
+ owl:onProperty sphn:hasIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
- owl:onProperty sphn:hasStandardOperatingProcedure ;
- owl:someValuesFrom sphn:StandardOperatingProcedure ] ) ],
+ owl:onProperty sphn:hasSample ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSample ;
+ owl:someValuesFrom sphn:Sample ] ) ],
sphn:Assay ;
owl:equivalentClass efo:0003740 ;
skos:definition "an assay that exploits a sequencer as the instrument to generate results" ;
@@ -10820,18 +10833,50 @@ sphn:LibraryPreparation a owl:Class ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasPredecessor ] [ a owl:Restriction ;
- owl:onProperty sphn:hasPredecessor ;
- owl:someValuesFrom sphn:SampleProcessing ] ) ],
+ owl:onProperty sphn:hasOutput ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasOutput ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasOutput ;
+ owl:someValuesFrom sphn:Sample ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasTargetEnrichmentKitCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasTargetEnrichmentKitCode ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasQualityControlMetric ] [ a owl:Restriction ;
owl:onProperty sphn:hasQualityControlMetric ;
owl:someValuesFrom sphn:QualityControlMetric ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCode ;
+ owl:someValuesFrom [ a owl:Class ;
+ owl:unionOf ( sphn:Terminology obi:0000711 sphn:Code ) ] ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasKitCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasKitCode ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10849,43 +10894,20 @@ sphn:LibraryPreparation a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
- owl:onProperty sphn:hasStandardOperatingProcedure ;
- owl:someValuesFrom sphn:StandardOperatingProcedure ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOutput ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasOutput ] [ a owl:Restriction ;
- owl:onProperty sphn:hasOutput ;
+ owl:onProperty sphn:hasInput ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasInput ;
owl:someValuesFrom sphn:Sample ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasKitCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasKitCode ] ) ],
[ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ],
+ owl:onProperty sphn:hasAdministrativeCase ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTargetEnrichmentKitCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasTargetEnrichmentKitCode ] ) ],
+ owl:onProperty sphn:hasStandardOperatingProcedure ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStandardOperatingProcedure ;
+ owl:someValuesFrom sphn:StandardOperatingProcedure ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10897,18 +10919,9 @@ sphn:LibraryPreparation a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasCode ;
- owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:Terminology sphn:Code obi:0000711 ) ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasInput ] [ a owl:Restriction ;
- owl:onProperty sphn:hasInput ;
- owl:someValuesFrom sphn:Sample ] ) ],
+ owl:onProperty sphn:hasPredecessor ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasPredecessor ;
+ owl:someValuesFrom sphn:SampleProcessing ] ) ],
sphn:SampleProcessing ;
owl:equivalentClass obi:0000711 ;
skos:definition "process which results in the creation of a library from fragments of DNA" ;
@@ -10944,6 +10957,10 @@ sphn:ValueSet a owl:Class ;
rdfs:subClassOf sphn:SPHNConcept ;
skos:definition "List of value sets provided by SPHN" .
+sphn:Deprecated a owl:Class ;
+ rdfs:label "Deprecated" ;
+ skos:definition "Deprecated classes of SPHN that existed in the previous version" .
+
sphn:GenomicPosition a owl:Class ;
rdfs:label "Genomic Position" ;
rdfs:subClassOf [ a owl:Class ;
@@ -10954,12 +10971,6 @@ sphn:GenomicPosition a owl:Class ;
owl:onProperty sphn:hasReferenceSequence ] [ a owl:Restriction ;
owl:onProperty sphn:hasReferenceSequence ;
owl:someValuesFrom sphn:ReferenceSequence ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEnd ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEnd ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -10974,15 +10985,32 @@ sphn:GenomicPosition a owl:Class ;
owl:onProperty sphn:hasCoordinateConvention ] [ a owl:Restriction ;
owl:onProperty sphn:hasCoordinateConvention ;
owl:someValuesFrom sphn:GenomicPosition_coordinateConvention ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEnd ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEnd ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass geno:0000902 ;
skos:definition "genomic position with respect to a reference" .
sphn:Measurement a owl:Class ;
rdfs:label "Measurement" ;
- rdfs:subClassOf [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ rdfs:subClassOf [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMedicalDevice ;
+ owl:someValuesFrom sphn:MedicalDevice ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -10992,9 +11020,20 @@ sphn:Measurement a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasStartDateTime ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMethodCode ;
+ owl:someValuesFrom snomed:128927009 ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -11009,34 +11048,12 @@ sphn:Measurement a owl:Class ;
owl:onProperty sphn:hasPerformer ] [ a owl:Restriction ;
owl:onProperty sphn:hasPerformer ;
owl:someValuesFrom sphn:Performer ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMedicalDevice ;
- owl:someValuesFrom sphn:MedicalDevice ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasStartDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasAdministrativeCase ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMethodCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMethodCode ;
- owl:someValuesFrom snomed:128927009 ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:122869004 ;
skos:definition "process of quantitatively defining the value or magnitude of an attribute or characteristic in comparison to a defined standard" ;
@@ -11045,28 +11062,9 @@ sphn:Measurement a owl:Class ;
sphn:TimeSeriesDataFile a owl:Class ;
rdfs:label "Time Series Data File" ;
- rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasHash ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasHash ] [ a owl:Restriction ;
- owl:onProperty sphn:hasHash ;
- owl:someValuesFrom sphn:Hash ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFormatCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasFormatCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasFormatCode ;
- owl:someValuesFrom edam:format_1915 ] ) ],
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSourceSystem ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -11078,9 +11076,9 @@ sphn:TimeSeriesDataFile a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCreationDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasUniformResourceIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCreationDateTime ] ) ],
+ owl:onProperty sphn:hasUniformResourceIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -11098,18 +11096,37 @@ sphn:TimeSeriesDataFile a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasUniformResourceIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCreationDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasUniformResourceIdentifier ] ) ],
+ owl:onProperty sphn:hasCreationDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasHash ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasHash ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasHash ;
+ owl:someValuesFrom sphn:Hash ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasName ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasName ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSourceSystem ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasFormatCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasFormatCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasFormatCode ;
+ owl:someValuesFrom edam:format_1915 ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
sphn:DataFile ;
skos:definition "electronic resource that contains all the results related to a measurement as time series" .
@@ -11122,10 +11139,6 @@ sphn:hasIdentifier a owl:DatatypeProperty ;
skos:definition "unique identifier identifying the concept" ;
sphn:subjectToDeIdentification true .
-sphn:Deprecated a owl:Class ;
- rdfs:label "Deprecated" ;
- skos:definition "Deprecated classes of SPHN that existed in the previous version" .
-
sphn:hasSample a owl:ObjectProperty ;
rdfs:label "has sample" ;
rdfs:domain [ a owl:Class ;
@@ -11153,19 +11166,19 @@ sphn:MedicalDevice a owl:Class ;
owl:onProperty sphn:hasTypeCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasTypeCode ;
owl:someValuesFrom [ a owl:Class ;
- owl:unionOf ( sphn:Code sphn:Terminology snomed:272181003 ) ] ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasProductCode ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasProductCode ] ) ],
+ owl:unionOf ( sphn:Terminology sphn:Code snomed:272181003 ) ] ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSoftware ] [ a owl:Restriction ;
owl:onProperty sphn:hasSoftware ;
owl:someValuesFrom sphn:Software ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasProductCode ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasProductCode ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:63653004 ;
skos:definition "product intended for medical use when the main effect is not achieved by a medicinal product; medical devices include, but are not limited to, implants, instruments, devices, in vitro diagnostics" ;
@@ -11177,23 +11190,9 @@ sphn:SPHNAttributeDatatype a owl:DatatypeProperty ;
sphn:DataFile a owl:Class ;
rdfs:label "Data File" ;
- rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasHash ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasHash ] [ a owl:Restriction ;
- owl:onProperty sphn:hasHash ;
- owl:someValuesFrom sphn:Hash ] ) ],
- [ a owl:Restriction ;
+ rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCreationDateTime ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCreationDateTime ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -11208,11 +11207,9 @@ sphn:DataFile a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEncoding ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasUniformResourceIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasEncoding ] [ a owl:Restriction ;
- owl:onProperty sphn:hasEncoding ;
- owl:someValuesFrom sphn:DataFile_encoding ] ) ],
+ owl:onProperty sphn:hasUniformResourceIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -11222,9 +11219,25 @@ sphn:DataFile a owl:Class ;
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasUniformResourceIdentifier ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasCreationDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasUniformResourceIdentifier ] ) ],
+ owl:onProperty sphn:hasCreationDateTime ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEncoding ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasEncoding ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasEncoding ;
+ owl:someValuesFrom sphn:DataFile_encoding ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasHash ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasHash ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasHash ;
+ owl:someValuesFrom sphn:Hash ] ) ],
sphn:SPHNConcept ;
skos:definition "electronic resource of information, which can be stored, accessed and transferred as a single unit" .
@@ -11263,16 +11276,22 @@ sphn:Sample a owl:Class ;
rdfs:label "Sample" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasMaterialTypeCode ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasMaterialTypeCode ;
+ owl:someValuesFrom snomed:123038009 ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
+ owl:onProperty sphn:hasAdministrativeCase ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCollectionDateTime ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasCollectionDateTime ] ) ],
+ owl:onProperty sphn:hasSubjectPseudoIdentifier ] ) ],
[ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSourceSystem ],
@@ -11284,15 +11303,12 @@ sphn:Sample a owl:Class ;
owl:onProperty sphn:hasMedicalDevice ] [ a owl:Restriction ;
owl:onProperty sphn:hasMedicalDevice ;
owl:someValuesFrom sphn:MedicalDevice ] ) ],
- [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasMaterialTypeCode ] [ a owl:Restriction ;
- owl:onProperty sphn:hasMaterialTypeCode ;
- owl:someValuesFrom snomed:123038009 ] ) ],
+ owl:onProperty sphn:hasSharedIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasSharedIdentifier ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -11301,12 +11317,9 @@ sphn:Sample a owl:Class ;
owl:onProperty sphn:hasPrimaryContainer ] [ a owl:Restriction ;
owl:onProperty sphn:hasPrimaryContainer ;
owl:someValuesFrom sphn:Sample_primaryContainer ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasAdministrativeCase ] ) ],
+ [ a owl:Restriction ;
+ owl:minCardinality "0"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasIdentifier ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "0"^^xsd:nonNegativeInteger ;
@@ -11325,10 +11338,10 @@ sphn:Sample a owl:Class ;
owl:someValuesFrom sphn:BodySite ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "0"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSharedIdentifier ] [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasCollectionDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasSharedIdentifier ] ) ],
+ owl:onProperty sphn:hasCollectionDateTime ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:123038009 ;
skos:definition "any material sample for testing, diagnostic, propagation, treatment or research purposes" ;
@@ -11351,14 +11364,6 @@ sphn:hasRecordDateTime a owl:DatatypeProperty ;
skos:definition "datetime the concept was recorded" ;
sphn:subjectToDeIdentification true .
-sphn:hasUnit a owl:ObjectProperty ;
- rdfs:label "has unit" ;
- rdfs:domain [ a owl:Class ;
- owl:unionOf ( sphn:Quantity sphn:SPHNConcept ) ] ;
- rdfs:range sphn:Unit ;
- rdfs:subPropertyOf sphn:SPHNAttributeObject ;
- skos:definition "unit of the concept" .
-
sphn:hasDataFile a owl:ObjectProperty ;
rdfs:label "has data file" ;
rdfs:domain [ a owl:Class ;
@@ -11368,6 +11373,14 @@ sphn:hasDataFile a owl:ObjectProperty ;
rdfs:subPropertyOf sphn:SPHNAttributeObject ;
skos:definition "data file associated to the concept" .
+sphn:hasUnit a owl:ObjectProperty ;
+ rdfs:label "has unit" ;
+ rdfs:domain [ a owl:Class ;
+ owl:unionOf ( sphn:Quantity sphn:SPHNConcept ) ] ;
+ rdfs:range sphn:Unit ;
+ rdfs:subPropertyOf sphn:SPHNAttributeObject ;
+ skos:definition "unit of the concept" .
+
sphn:hasTypeCode a owl:ObjectProperty ;
rdfs:label "has type code" ;
rdfs:domain [ a owl:Class ;
@@ -11430,12 +11443,6 @@ sphn:hasBodySite a owl:ObjectProperty ;
sphn:Code a owl:Class ;
rdfs:label "Code" ;
rdfs:subClassOf [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasIdentifier ] ) ],
- [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCodingSystemAndVersion ] [ a owl:Restriction ;
@@ -11447,6 +11454,12 @@ sphn:Code a owl:Class ;
owl:onProperty sphn:hasName ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasName ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasIdentifier ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasIdentifier ] ) ],
sphn:SPHNConcept ;
skos:definition "symbols and/or expressions defined in a coding system" .
@@ -11505,14 +11518,6 @@ sphn:Quantity a owl:Class ;
owl:onProperty sphn:hasComparator ] [ a owl:Restriction ;
owl:onProperty sphn:hasComparator ;
owl:someValuesFrom sphn:Comparator ] ) ],
- [ a owl:Class ;
- owl:intersectionOf ( [ a owl:Restriction ;
- owl:minCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasValue ] [ a owl:Restriction ;
- owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
- owl:onProperty sphn:hasValue ] [ a owl:Restriction ;
- owl:onProperty sphn:hasValue ;
- owl:someValuesFrom xsd:double ] ) ],
[ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
@@ -11521,6 +11526,14 @@ sphn:Quantity a owl:Class ;
owl:onProperty sphn:hasUnit ] [ a owl:Restriction ;
owl:onProperty sphn:hasUnit ;
owl:someValuesFrom sphn:Unit ] ) ],
+ [ a owl:Class ;
+ owl:intersectionOf ( [ a owl:Restriction ;
+ owl:minCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasValue ] [ a owl:Restriction ;
+ owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
+ owl:onProperty sphn:hasValue ] [ a owl:Restriction ;
+ owl:onProperty sphn:hasValue ;
+ owl:someValuesFrom xsd:double ] ) ],
sphn:SPHNConcept ;
skos:definition "an amount or a number of something" .